View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2369_low_1 (Length: 719)
Name: NF2369_low_1
Description: NF2369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2369_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 141 - 708
Target Start/End: Complemental strand, 37285932 - 37285342
Alignment:
| Q |
141 |
tataggaaaatacgtgatgaaatgaaagagcttgtgtttgtgttgttgtgactactaactaactatagaacaagattaaatggctgccacgtgctgtaac |
240 |
Q |
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| T |
37285932 |
tataggaaaatacgtgatgaaatgaaagagcttgtgtttgtgttgttgtgactactaactaactatagaagaagattaaatggctgccacgtgctgtaac |
37285833 |
T |
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| Q |
241 |
ctcacacatgcttctcctttccttaatcatcaactcttctacttccaaaggcaagttccctcttatagttttttctatatgcaaacaatcatacaaat-- |
338 |
Q |
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| T |
37285832 |
ctcacacatgcttctcctttccttaatcatcaactcttctacttccaaaggcaagttccctcttatagttttttctatatgcaaacaatcatacaaatat |
37285733 |
T |
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| Q |
339 |
----------ggaattaatggaaatatacatacttaa-ttataagtatataacatgtta----------attttcaggtaccatttagtttccaaaagat |
417 |
Q |
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| T |
37285732 |
acatacaaatggaattaatggaaatatacatacttaaattataagtatataacatgttatgttaggttaattttcaggtaccatttagtttccaaaagat |
37285633 |
T |
|
| Q |
418 |
caaaatgtaataccagtatggaaaaagttttacataggagatttcaagttcaaagaagggatcatcactacatacatgtgcgttatgctggaggagctga |
517 |
Q |
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| T |
37285632 |
caaaatgtaataccagtatggaaaaagttttacataggagatttcaagttcaaagaagggatcatcactacatacatgtgcgttatgctggaggagctga |
37285533 |
T |
|
| Q |
518 |
attatcctcttcttctagttccagcattgaaaaatatgttggagaggaaattcaagaggatatttcaatggaaacattgatttggagggctatcaagttg |
617 |
Q |
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| T |
37285532 |
attatcctcttcttctagttccagcattgaaaaaaatgttggagaggaaattcaagaggatatttcaatggaaacattgatttggagggctatcaagttg |
37285433 |
T |
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| Q |
618 |
cctatttactctgttgctttggtccctctcactgtgagcatctcaactatatatacttttagattaattgttaaattcagcataggttcat |
708 |
Q |
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| T |
37285432 |
cctatttactctgttgctttggtccctctcactgtgagcatctcaactatatatacttttagattaattgttaaattcagcataggttcat |
37285342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 37286083 - 37285961
Alignment:
| Q |
20 |
ggaaggattgtagtaagaggatatggtatgaaatcatctccagttt-cacaacttcataaaacttgcttactttgttttgttgtcttcagcttcacttta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37286083 |
ggaaggattgtagtaagaggatatggtatgaaatcatctccagttttcacaacttcataaaacttgcttactttgttttgttgtcttcagcttcacttta |
37285984 |
T |
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| Q |
119 |
ctaagtttatctacttcattggt |
141 |
Q |
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| T |
37285983 |
ctaagtttatctacttcattggt |
37285961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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