View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2369_low_10 (Length: 331)
Name: NF2369_low_10
Description: NF2369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2369_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 33281642 - 33281337
Alignment:
| Q |
18 |
gtgtttgagatccttcaaatgtacgaacaatttaag---agtatttagannnnnnnnng-ttaagtgttgtaacatgaacaattttttgtttttaggaaa |
113 |
Q |
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| T |
33281642 |
gtgtttgagatccttcaaatgtacgaacaatttaagcagagtatttagatttttattttcttaagtgttgtaacatgaacaattttttgtttataggaaa |
33281543 |
T |
|
| Q |
114 |
acatatgaaaacaannnnnnnnnnaggaaaacataaacaaattcttaaacaatattactttttaagaaatattgtaatttcaaatatacatttcccctta |
213 |
Q |
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| T |
33281542 |
acataagcaaacaattttttttt-aggaaaacagaaacaaattcttaaacaagattactttttaagaaatattgtaatttcaaatatacatttcccctta |
33281444 |
T |
|
| Q |
214 |
aataattcattaacaaacactcatttagagacaaatcttttaactatggctacacgcttgttgcatgagaagactcaactttcacctaaatgaataccac |
313 |
Q |
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||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
33281443 |
aataattcattaacaaacactcatttagagatgaattttttgactatggctacacgcttattgcatgagaagactcaactttcacctaaatgaatactac |
33281344 |
T |
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| Q |
314 |
catctct |
320 |
Q |
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||||||| |
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| T |
33281343 |
catctct |
33281337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 138 - 262
Target Start/End: Complemental strand, 19217767 - 19217642
Alignment:
| Q |
138 |
aggaaaacataaacaaattcttaaacaatattactttttaagaaatattgtaatttcaaatatacatttccc-cttaaataattcattaacaaacactca |
236 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
19217767 |
aggaaaacataaacaaattcttaaacaacattaacttttaagaaatattgtaatttcaaatagacatttcccgcttaaataattcattaacaaacactca |
19217668 |
T |
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| Q |
237 |
tttagagacaaatcttttaactatgg |
262 |
Q |
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||||||||| |||||||| ||||||| |
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| T |
19217667 |
tttagagacgaatcttttgactatgg |
19217642 |
T |
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