View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2369_low_11 (Length: 322)
Name: NF2369_low_11
Description: NF2369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2369_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 37771087 - 37770828
Alignment:
| Q |
14 |
atatagcatccatatgtaatttcccatgaacaatgaaggtaatcagcgactgtgaacatcaccttttctagaccaaacattaaaaaataatcaatagaga |
113 |
Q |
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| T |
37771087 |
atatagcatccatatgtaatttcccatgaacaatgaaggtaatcagcgactgtgaacatcaccttttctagaccaaacattaaaaaataatcaatagaga |
37770988 |
T |
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| Q |
114 |
atatcttacacttgattaacattgttgttaaagtcacagttaacacgcgaccaggtacaagggttgacttgattttcattccagtcactaagctgttgac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37770987 |
atatcttacacttgattaacattgttgttaaagtcacagttaacgcgcgaccaggtacaagggttgacttgattttcattccagtcactaagctgttgac |
37770888 |
T |
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| Q |
214 |
ctgaagcattcagtgataacttcaatgcaatcagtgcatctcctgaaatgaacaaaacca |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37770887 |
ctgaagcattcagtgataacttcaatgcaatcagtgcatctcctgaaatgaacaaaacca |
37770828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 39474293 - 39474188
Alignment:
| Q |
162 |
gaccaggtacaagggttgacttgattttcattccagtcactaagctgttgacctgaagcattcagtgataacttcaatgcaatcagtgcatctcctgaaa |
261 |
Q |
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||||| ||||||||||| |||||||||| ||||||| | ||||||| | |||||||||||| ||||||||||||||| ||||||||| ||| || |
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| T |
39474293 |
gaccaagtacaagggtttacttgatttttgttccagttagtaagctggttgggtgaagcattcagagataacttcaatgcatatagtgcatcttctgtaa |
39474194 |
T |
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| Q |
262 |
tgaaca |
267 |
Q |
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| |||| |
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| T |
39474193 |
taaaca |
39474188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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