View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2369_low_2 (Length: 629)
Name: NF2369_low_2
Description: NF2369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2369_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 22 - 429
Target Start/End: Original strand, 27548931 - 27549338
Alignment:
| Q |
22 |
tgtcggtctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcggtgcaagaaacagtgaggccaaccattggttcaagt |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27548931 |
tgtcggtctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcggtgcaagaaatagtgaggccaaccattggttcaagt |
27549030 |
T |
|
| Q |
122 |
atgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcccctacaaa |
221 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27549031 |
atgagatggaaaacatactacagtcagtgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcccctacaaa |
27549130 |
T |
|
| Q |
222 |
tcttatagtatccattttctccccacgtctcgccccaggagtttttaacaatccaatacggcttctccttcgtataagctccagaaccgtaccccaccag |
321 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27549131 |
tcttatagtatccattttctccccacgtctcgccccaggagcttttaacaatccaatacggcttctccttcgtataagctccagaaccgtaccccaccag |
27549230 |
T |
|
| Q |
322 |
caaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccgcatttatggcaactgcatttgtg |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27549231 |
caaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccgcatttatggcaactgcatttgtg |
27549330 |
T |
|
| Q |
422 |
aacatttg |
429 |
Q |
| |
|
|||||||| |
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|
| T |
27549331 |
aacatttg |
27549338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 111 - 429
Target Start/End: Complemental strand, 27945701 - 27945371
Alignment:
| Q |
111 |
ttggttcaagtatgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27945701 |
ttggttcaagtatgagatggaaaacatactactgtcactgagtattagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcg |
27945602 |
T |
|
| Q |
211 |
tcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttttaacaatccaatacggcttctc------cttcgtat------aa |
298 |
Q |
| |
|
|||||| |||||||| |||||||| || |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| ||| | |
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| T |
27945601 |
tcccctgcaaatcttgtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctcca |
27945502 |
T |
|
| Q |
299 |
gctccagaaccgtaccccaccagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccg |
398 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| ||| |
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|
| T |
27945501 |
gctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccacgtatgtctgcatgtataccg |
27945402 |
T |
|
| Q |
399 |
catttatggcaactgcatttgtgaacatttg |
429 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||| |
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|
| T |
27945401 |
cgtttattgcagctgcatttgtgaacatttg |
27945371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 111 - 429
Target Start/End: Complemental strand, 27437209 - 27436879
Alignment:
| Q |
111 |
ttggttcaagtatgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcg |
210 |
Q |
| |
|
||||| || ||||||||| |||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27437209 |
ttggtacatgtatgagatagaaatcatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcg |
27437110 |
T |
|
| Q |
211 |
tcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttttaacaatccaatacggcttctc------cttcgtat------aa |
298 |
Q |
| |
|
||| || |||||||| |||||||| || |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| ||| | |
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|
| T |
27437109 |
tcctctgcaaatcttgtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctcca |
27437010 |
T |
|
| Q |
299 |
gctccagaaccgtaccccaccagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccg |
398 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| ||| |
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|
| T |
27437009 |
gctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccacgtatgtctgcatgtataccg |
27436910 |
T |
|
| Q |
399 |
catttatggcaactgcatttgtgaacatttg |
429 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||| |
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|
| T |
27436909 |
cgtttattgcagctgcatttgtgaacatttg |
27436879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 481 - 618
Target Start/End: Original strand, 27549390 - 27549527
Alignment:
| Q |
481 |
gttcagatttttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgcc |
580 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27549390 |
gttcagattgttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgcc |
27549489 |
T |
|
| Q |
581 |
gccaccgatcgtgcaatgtttgtcttgtaataagtata |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
27549490 |
gccaccgatcgtgcaatgtttgtcttgtaataagtata |
27549527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 167 - 427
Target Start/End: Complemental strand, 26766481 - 26766209
Alignment:
| Q |
167 |
gcagccacagtagaaaccattgagtccactccacagatatttcgtcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttt |
266 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||| ||||| ||||| ||||||| |
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|
| T |
26766481 |
gcagccacagtagaaaccatagagtccactccgcagatatttcgtcccctgcatattttatagtatccattttctccccaagtctcaccccatgagtttt |
26766382 |
T |
|
| Q |
267 |
taacaatccaatacggcttctcctt------------cgtataagctccagaaccgtaccccaccagcaaaactccatgatccagcctccttgtacaagt |
354 |
Q |
| |
|
||| |||||||| ||||||||||| || ||| |||||||| || || |||||||| || ||||||||||| || ||| ||| || | |
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|
| T |
26766381 |
taattatccaatatggcttctccttcaacctaataggcgaataggctccagatccatatcccaccagtaacactccatgatctagtctctttgagcatat |
26766282 |
T |
|
| Q |
355 |
gtatgggcacgatacacctcccacgtatgtctgcatgtatgccgcatttatggcaactgcatttgtgaacatt |
427 |
Q |
| |
|
|||||| || ||||| ||||| ||||| || ||||| ||| | ||||| | |||||||||||||||| ||||| |
|
|
| T |
26766281 |
gtatggacatgatactcctccaacgtacgtttgcatatatacggcattcaaggcaactgcatttgtgcacatt |
26766209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 490 - 618
Target Start/End: Complemental strand, 27945319 - 27945191
Alignment:
| Q |
490 |
tttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgccgccaccgat |
589 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||| | |||||||| || ||||||| ||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
27945319 |
tttagagtattactgaccagcaagaggtccatgtttaacgagattggcggcgatttggttgtcatcaaccgaaatagaactgaaatttgccgccaccgat |
27945220 |
T |
|
| Q |
590 |
cgtgcaatgtttgtcttgtaataagtata |
618 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |
|
|
| T |
27945219 |
cgtgcagtgtttgtcttataataagtata |
27945191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 490 - 618
Target Start/End: Complemental strand, 27436827 - 27436699
Alignment:
| Q |
490 |
tttagggtattactcaccagcaagaggtccatatttgagaagattggcagcaatttggtcgtcatcaactaaaacagaactgaaatttgccgccaccgat |
589 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||| | |||||||| | ||||||| ||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
27436827 |
tttagagtattactgaccagcaagaggtccatgtttaacgagattggcggtgatttggttgtcatcaaccgaaatagaactgaaatttgccgccaccgat |
27436728 |
T |
|
| Q |
590 |
cgtgcaatgtttgtcttgtaataagtata |
618 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |
|
|
| T |
27436727 |
cgtgcagtgtttgtcttataataagtata |
27436699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 27437334 - 27437247
Alignment:
| Q |
27 |
gtctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcggtgcaagaaacagtgaggccaaccattgg |
114 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
27437334 |
gtctccaacaatagtgtgagctttacaagcgagacattatgtgctggaagacatcttcggtgcaaggaataggaaggccaaccattgg |
27437247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 27945821 - 27945763
Alignment:
| Q |
27 |
gtctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcg |
85 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
27945821 |
gtctcctataatagtgtgagctcaacaagtgagacattatgtgctggaagacatcttcg |
27945763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 27504097 - 27504035
Alignment:
| Q |
52 |
caagcgagacgttatgtgctggaagacatcttcggtgcaagaaacagtgaggccaaccattgg |
114 |
Q |
| |
|
||||| ||| |||||||| |||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
27504097 |
caagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattgg |
27504035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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