View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2369_low_5 (Length: 463)
Name: NF2369_low_5
Description: NF2369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2369_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 32272748 - 32272916
Alignment:
| Q |
18 |
aattgtacatgaatgaaatcttgtgtgtttttctatacacatgcagacatattaaacaagagaaagaatgagattaagaataatactataagaattgtgg |
117 |
Q |
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| T |
32272748 |
aattgtacatgaatgaaatcttgtgtgtttttctatacacatgcagacatattaaacaagagaaagaatgagattaagaataatactataagaattgtgg |
32272847 |
T |
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| Q |
118 |
catatactaataaaataaggtagcaagatctaggacaaaacattacattaacacaaataataacaacct |
186 |
Q |
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| T |
32272848 |
catatactaataaaataaggtagcaagatctaggacaaaacattacattaacacaaataataacaacct |
32272916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 286 - 409
Target Start/End: Original strand, 32273016 - 32273139
Alignment:
| Q |
286 |
ctcgttgtacttgtttctgtttctgagggaacaaggaaataggaatgagtctcgaagcaacatgcggatctatttactataataatgaaaaacaatgcta |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32273016 |
ctcgttgtacttgtttctgtttctgagggaacaaggaaataggaatgagtctcgaagcaacatgcggatctatttactataataatgaaaaacaatgcta |
32273115 |
T |
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| Q |
386 |
aatttgatgcaatgtcgtaaaaca |
409 |
Q |
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| T |
32273116 |
aatttgatgcaatgtcgtaaaaca |
32273139 |
T |
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