View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2370_low_1 (Length: 308)
Name: NF2370_low_1
Description: NF2370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2370_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 35204732 - 35204453
Alignment:
| Q |
9 |
tcgagtgagaagaatgaaaaacaaagacgaagagaaattaaatcatagatgcagtagatgaagtggagggaaaacaaggagtaaatatccaattttgtcc |
108 |
Q |
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|||| ||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204732 |
tcgaatgaaaagaatgaaaaacaaaaaagaagagaaattaaatcatagatgcagtagatgaagtggagggaaaacaaggagtaaatatccaattttgtcc |
35204633 |
T |
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| Q |
109 |
atagaattgtaagaccgtaacaactaaattcatcacattgttaatattctaaaatgggtcgacattgcaaaatattaatcaaattcgtctccacatcttg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204632 |
atagaattgtaagaccgtaacaactaaattcatcacattgttaatattttaaaatgggtcgacattgcaaaatattaatcaaattcgtctccacatcttg |
35204533 |
T |
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| Q |
209 |
annnnnnncaaccaaatttctttaaaacttctataagtatcaatggagagacgaatttaattaatattttaccattcacg |
288 |
Q |
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| T |
35204532 |
atttttttcaatcaaatttctttaaaacttctataagtatcaatggagagacgaatttaattaatattttgccattcacg |
35204453 |
T |
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