View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2370_low_1_N (Length: 522)
Name: NF2370_low_1_N
Description: NF2370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2370_low_1_N |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 268 - 513
Target Start/End: Complemental strand, 47286457 - 47286212
Alignment:
| Q |
268 |
ccaagaaactaacgatccaagcgaaaacaacttatatccattcgttcatcttctacctaatggaaaccttttcattttcgcaaacacacgatccatttta |
367 |
Q |
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| T |
47286457 |
ccaagaaactaacgatccaagcgaaaacaacttatatccattcgttcatcttctacctaatggaaaccttttcattttcgcaaacacacgatccatttta |
47286358 |
T |
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| Q |
368 |
tttgattacaaacaaaacgtcgctgttaaagaatttcctgagattccaggtggtgatcctcataactatcctagttcaggatcatctgttcttcttccat |
467 |
Q |
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| T |
47286357 |
tttgattacaaacaaaacgtcgttgttaaagaatttcctgagattccaggtggtgatcctcataactatcctagttcaggatcatctgttcttcttccat |
47286258 |
T |
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| Q |
468 |
tagacgaaaaccaaatctccatggaagctacaatcatgatctgtgg |
513 |
Q |
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| T |
47286257 |
tagacgaaaaccaaatctccatggaagctacaatcatgatctgtgg |
47286212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 47286695 - 47286503
Alignment:
| Q |
30 |
gtttcaacgatggtgagcgtcgaattcgaatgttcacaccatgtttcaacgaaaattgtgattggattgaattcccaagttacttatccgaaagaagatg |
129 |
Q |
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| T |
47286695 |
gtttcaacgatggtgagcgtcgaattcgaatgttcacaccatgtttcaacgaaaattgtgattggattgaattcccaagttacttatccgaaagaagatg |
47286596 |
T |
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| Q |
130 |
gtatgcaacaaatcaaatactaccagataatcgcattataattattggtggtagaagacaattcaactatgaattcattcctaaaacaacgac |
222 |
Q |
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| T |
47286595 |
gtatgcaacaaatcaaatactaccagataatcgcattataattattggtggtagaagacaattcaactatgaattcattcctaaaacaacgac |
47286503 |
T |
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