View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2370_low_6 (Length: 302)
Name: NF2370_low_6
Description: NF2370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2370_low_6 |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 28763562 - 28763835
Alignment:
| Q |
29 |
acatcggaaaatacttgcaatcttttattaagtaatgacaaggatttcaaaacaaaatgcaacaattcaaataaattcaaacaagtaaatcataagaaag |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28763562 |
acatcggaaaatacttgcaatcttttattaagtaatgacaaggatttcaaaacaaaatgcaacaattcaaataaattcaaacaagtaaatcataagaaag |
28763661 |
T |
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| Q |
129 |
gaacaattgtcagcaaattggaaccaaactttcaacataatttttggaaagaaaccattgaatggaattgataattctagttagctccactctattatct |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28763662 |
gaacaattgtcagcaaattggaaccaaactttcaacataatttttggaaagaaaccattgaatggaattgataattctagttagctccactctattatct |
28763761 |
T |
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| Q |
229 |
cgaatgttgtagataattgcttggtcttcatgattattggccaatatcagtttatcaccattctcggaaagaca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28763762 |
cgaatgttgtagataattgcttggtcttcatgattattggccaatatcagtttatcaccattctcggaaagaca |
28763835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 29820880 - 29820958
Alignment:
| Q |
43 |
ttgcaatcttttattaagtaatgacaaggatttcaaaacaaaatgcaacaattcaaataaattcaaacaagtaaatcat |
121 |
Q |
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| T |
29820880 |
ttgcaatcttttactatgaaatgatatagatttcaaaataacatacatgaattcaaataaattcgaacaagtaaatcat |
29820958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 19325680 - 19325788
Alignment:
| Q |
62 |
aatgacaaggatttcaaaacaaaatgcaacaattcaaataaattcaaacaagtaaatcataagaaaggaac-aattgtcagcaaattggaaccaaacttt |
160 |
Q |
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|||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||| | |||| ||| | | ||| ||||||| | ||||||||| |
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| T |
19325680 |
aatgacaaggatttcaaaacaacccgcatgaattcaaacaaattggaacaagtaaatcatcataaagaaacttactttcaacaaattgaagccaaacttt |
19325779 |
T |
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| Q |
161 |
caacataat |
169 |
Q |
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||||||||| |
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| T |
19325780 |
caacataat |
19325788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 12819677 - 12819705
Alignment:
| Q |
92 |
aattcaaataaattcaaacaagtaaatca |
120 |
Q |
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| T |
12819677 |
aattcaaataaattcaaacaagtaaatca |
12819705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 24254124 - 24254232
Alignment:
| Q |
62 |
aatgacaaggatttcaaaacaaaatgcaacaattcaaataaattcaaacaagtaaatcataagaaaggaac-aattgtcagcaaattggaaccaaacttt |
160 |
Q |
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|||||||| ||||||||||||| | ||| ||| |||| ||||| |||||||||||||| | |||| ||| ||| ||| ||||||| | ||||||||| |
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| T |
24254124 |
aatgacaaagatttcaaaacaacacgcatgaatccaaacaaattagaacaagtaaatcatcataaagaaacttattttcaacaaattgaagccaaacttt |
24254223 |
T |
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| Q |
161 |
caacataat |
169 |
Q |
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|||| |||| |
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| T |
24254224 |
caacgtaat |
24254232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 10482382 - 10482318
Alignment:
| Q |
238 |
tagataattgcttggtcttcatgattattggccaatatcagtttatcaccattctcggaaagaca |
302 |
Q |
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||||||| ||||| || ||| |||||||| |||||||| ||| |||||||||||| |||||||| |
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| T |
10482382 |
tagataaatgcttcgttttcttgattatttgccaatattagtgtatcaccattcttagaaagaca |
10482318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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