View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_high_14 (Length: 459)
Name: NF2371_high_14
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_14 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 31320245 - 31320665
Alignment:
| Q |
19 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320245 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
31320344 |
T |
|
| Q |
119 |
ttattgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataata |
218 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
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| T |
31320345 |
ttattgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattata |
31320444 |
T |
|
| Q |
219 |
acaggatgcaaagctgagagattcttgtttgataataattataagaataccaataccagaaagaagaagaaatgtttgggagtgttggccaagactttaa |
318 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||| |||||||||| |
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| T |
31320445 |
acaggatgtaaagctgagagattcttgtttgaaaataattataggaatgccaataccagaaagaataagaaatgtttgggagttttggcgaagactttaa |
31320544 |
T |
|
| Q |
319 |
acagtagagtcacaatgaagctacagattgaggccaaagtgacaatttctgcaggtggggcaattcttacaccaccattattgatctctagtggttta-- |
416 |
Q |
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| T |
31320545 |
atagcggagtcacaatgaagctgcaatttgaagcaaaagtaacaatttcagcaggtggagcacttctaacacctccattgatgatttctagtggtttaac |
31320644 |
T |
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| Q |
417 |
-aagaacaaaaacattggtag |
436 |
Q |
| |
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||||| |||||||||||||| |
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| T |
31320645 |
taagaataaaaacattggtag |
31320665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 31332498 - 31332918
Alignment:
| Q |
19 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332498 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
31332597 |
T |
|
| Q |
119 |
ttattgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataata |
218 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
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| T |
31332598 |
ttattgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattata |
31332697 |
T |
|
| Q |
219 |
acaggatgcaaagctgagagattcttgtttgataataattataagaataccaataccagaaagaagaagaaatgtttgggagtgttggccaagactttaa |
318 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||| |||||||||| |
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| T |
31332698 |
acaggatgtaaagctgagagattcttgtttgaaaataattataggaatgccaataccagaaagaataagaaatgtttgggagttttggcgaagactttaa |
31332797 |
T |
|
| Q |
319 |
acagtagagtcacaatgaagctacagattgaggccaaagtgacaatttctgcaggtggggcaattcttacaccaccattattgatctctagtggttta-- |
416 |
Q |
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| || |||||||||||||||| || |||| || ||||| |||||||| |||||||| ||| |||| ||||| ||||| |||| |||||||||||| |
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| T |
31332798 |
atagcggagtcacaatgaagctgcaatttgaagcaaaagtaacaatttcagcaggtggagcacttctaacacctccattgatgatttctagtggtttaac |
31332897 |
T |
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| Q |
417 |
-aagaacaaaaacattggtag |
436 |
Q |
| |
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||||| |||||||||||||| |
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| T |
31332898 |
taagaataaaaacattggtag |
31332918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 436
Target Start/End: Complemental strand, 3425 - 3005
Alignment:
| Q |
19 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425 |
attgtacacaagaaggattccaaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatca |
3326 |
T |
|
| Q |
119 |
ttattgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataata |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
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| T |
3325 |
ttattgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattata |
3226 |
T |
|
| Q |
219 |
acaggatgcaaagctgagagattcttgtttgataataattataagaataccaataccagaaagaagaagaaatgtttgggagtgttggccaagactttaa |
318 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||| |||||||||| |
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| T |
3225 |
acaggatgtaaagctgagagattcttgtttgaaaataattataggaatgccaataccagaaagaataagaaatgtttgggagttttggcgaagactttaa |
3126 |
T |
|
| Q |
319 |
acagtagagtcacaatgaagctacagattgaggccaaagtgacaatttctgcaggtggggcaattcttacaccaccattattgatctctagtggttta-- |
416 |
Q |
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| || |||||||||||||||| || |||| || ||||| |||||||| |||||||| ||| |||| ||||| ||||| |||| |||||||||||| |
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| T |
3125 |
atagcggagtcacaatgaagctgcaatttgaagcaaaagtaacaatttcagcaggtggagcacttctaacacctccattgatgatttctagtggtttaac |
3026 |
T |
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| Q |
417 |
-aagaacaaaaacattggtag |
436 |
Q |
| |
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||||| |||||||||||||| |
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| T |
3025 |
taagaataaaaacattggtag |
3005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 33522105 - 33521947
Alignment:
| Q |
82 |
aagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaaaaggtga-----gaaacaagggactcaagct |
176 |
Q |
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|||| ||||||||||| ||||||||| ||| | ||||||| |||||||| ||| ||||||||| ||||||| || ||||||||||| | | | |
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| T |
33522105 |
aagtcgattatgtgccgagaaattcatcagagcatcattactgtggttcttgtaactatggttgtacaaaaggagataaacaaaacaagggaccgatgtt |
33522006 |
T |
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| Q |
177 |
acatggcttgtagatgctgttgaaaaagatgctgtgataataacaggatgcaaagctga |
235 |
Q |
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||||||||||| |||||||| ||| | | |||||| ||| ||||| ||||||||||||| |
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| T |
33522005 |
acatggcttgtcgatgctgtggaacacggtgctgtaatactaacaagatgcaaagctga |
33521947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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