View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2371_high_17 (Length: 436)
Name: NF2371_high_17
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 434
Target Start/End: Original strand, 45270560 - 45270989
Alignment:
| Q |
20 |
gcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45270560 |
gcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatgccacagcttgcat |
45270659 |
T |
|
| Q |
120 |
accagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttc |
219 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270660 |
accggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttc |
45270759 |
T |
|
| Q |
220 |
gatcacaccgg------------------ctatatatatatcttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatt |
301 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
45270760 |
tataacaccggctatatatatgtatgtgtctatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttgagagtgatgctactatt |
45270859 |
T |
|
| Q |
302 |
tcacatctactctctcttcattcataaggtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaaggtggcact |
401 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| | |
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| T |
45270860 |
tcacatctactctctcttcattcataaggtacacaattaattaaataaaat--aaaagctttgatcgat-ataactgaattacgtacaaaaggtggcagt |
45270956 |
T |
|
| Q |
402 |
gttctgtatagtggtaccggcgttttggttctt |
434 |
Q |
| |
|
||||||| | |||||||||| |||||||||| |
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|
| T |
45270957 |
gttctgtgtgttggtaccggccatttggttctt |
45270989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 398
Target Start/End: Original strand, 45282332 - 45282727
Alignment:
| Q |
22 |
ctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgac |
121 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45282332 |
ctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgac |
45282431 |
T |
|
| Q |
122 |
cagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcga |
221 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |
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|
| T |
45282432 |
catcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaattaattagtaatttcga |
45282531 |
T |
|
| Q |
222 |
tcacaccggctatata---------------------tatatcttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactat |
300 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||| | |
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|
| T |
45282532 |
tcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagtt-atgttttcttcaaaaatgaattttgagagtgatgccacttt |
45282630 |
T |
|
| Q |
301 |
ttcacatctactctctcttcattcataaggtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaaggtggc |
398 |
Q |
| |
|
||| ||| |||||| ||||||||||||| ||| | |||||||||||||||||||||||| |||||||||| |||| ||||||| ||||| |||||||| |
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|
| T |
45282631 |
ttctcatatactctttcttcattcataa-gtaaataattaattaaataaaataaaaaagttttgatcgatgataattgaattaagtaccgaaggtggc |
45282727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 398
Target Start/End: Original strand, 45274087 - 45274486
Alignment:
| Q |
20 |
gcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtg |
119 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
45274087 |
gcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctacgtttctaaatgccacagcttggtg |
45274186 |
T |
|
| Q |
120 |
accagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttc |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| ||| |
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|
| T |
45274187 |
accatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcacgcatggataatcaattaattagtaatttc |
45274286 |
T |
|
| Q |
220 |
gatcacaccggctatata---------tata------------tcttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctact |
298 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||| ||||| |||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
45274287 |
gatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagtt-atgttttcttcaaaaataaattttgagagtgatgctact |
45274385 |
T |
|
| Q |
299 |
atttcacatctactctctcttcattcataaggtacacaattaattaaataaaat-aaaaaagctttgatcgataataactgaattacgtaccaaaggtgg |
397 |
Q |
| |
|
|||| || |||||| |||||| |||||||||| ||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
45274386 |
ttttcttatatactctttcttcaatcataaggtatacaattaatcaaataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtgg |
45274485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 45293670 - 45293884
Alignment:
| Q |
20 |
gcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45293670 |
gcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtg |
45293769 |
T |
|
| Q |
120 |
accagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293770 |
accagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttc |
45293869 |
T |
|
| Q |
220 |
gatcacaccggctat |
234 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45293870 |
gatcacaccggctat |
45293884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 45302630 - 45302844
Alignment:
| Q |
20 |
gcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45302630 |
gcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtg |
45302729 |
T |
|
| Q |
120 |
accagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45302730 |
accagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttc |
45302829 |
T |
|
| Q |
220 |
gatcacaccggctat |
234 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45302830 |
gatcacaccggctat |
45302844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 232 - 398
Target Start/End: Original strand, 45293948 - 45294115
Alignment:
| Q |
232 |
tatatatatatcttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatc--tactctctcttcattcataag |
329 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||| ||| || |||||||||||||| |
|
|
| T |
45293948 |
tatatataaatcttttcaatgtgagtta-tgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataag |
45294046 |
T |
|
| Q |
330 |
gtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaaggtggc |
398 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | |||||||| |||| |||||||| |||| |||||||| |
|
|
| T |
45294047 |
gtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggc |
45294115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 232 - 398
Target Start/End: Original strand, 45302908 - 45303075
Alignment:
| Q |
232 |
tatatatatatcttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatc--tactctctcttcattcataag |
329 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||| ||| || |||||||||||||| |
|
|
| T |
45302908 |
tatatataaatcttttcaatgtgagtta-tgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataag |
45303006 |
T |
|
| Q |
330 |
gtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaaggtggc |
398 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | |||||||| |||| |||||||| |||| |||||||| |
|
|
| T |
45303007 |
gtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggc |
45303075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 38587600 - 38587643
Alignment:
| Q |
76 |
aaagcagacatatctccttggtttctaaatgccacagcttggtg |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
38587600 |
aaagcagacatgtctccttggtttctaaatgccactgcttggtg |
38587643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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