View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2371_high_21 (Length: 428)
Name: NF2371_high_21
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 36149003 - 36149400
Alignment:
| Q |
18 |
acttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatttgcagcac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149003 |
acttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatttgcagcac |
36149102 |
T |
|
| Q |
118 |
gtaaacgggtcaagtgacctggtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149103 |
gtaaacgggtcaagtgacctggtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacg |
36149202 |
T |
|
| Q |
218 |
ttcatatgataagccattctcagcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149203 |
ttcatatgataagccattctcagcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaact |
36149302 |
T |
|
| Q |
318 |
tcatgcaatggtggtggagagtcattttcttttgtctctgcatcagtctcatcttccttcacgtgtgctacttcttgtccttgattaggagagtgttc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149303 |
tcatgcaatggtggtggagagtcattttcttttgtctctgcatcagtctcatcttccttcacgtgtgctacttcttgtccttgattaggagagtgttc |
36149400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 36083106 - 36083412
Alignment:
| Q |
18 |
acttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatttgcagcac |
117 |
Q |
| |
|
|||| ||||||||| || || |||||||| |||| ||||||||| ||||||| ||||| || |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36083106 |
acttcgtctccaagcagtggctttttgtgacgcacataacgatgtaaaccatatttgatggctacacgtgcaagtttttcagtgtcgacatttgcagcac |
36083205 |
T |
|
| Q |
118 |
gtaaacgggtcaagtgacctggtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacg |
217 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36083206 |
gtaaacgggtcaagtgacctggtgccagcgttggatatgcatgaaattgttccgttgttatcattaggttaagaactgaatcacctatgtattccaaacg |
36083305 |
T |
|
| Q |
218 |
ttcatatgataagccattctcagcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaact |
317 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
36083306 |
ctcataagataagccattctcagcaccgtaagtacagtgagtgaaagcctcttctagcaatagtatgttcttaaattcgtattctagaattgcttccact |
36083405 |
T |
|
| Q |
318 |
tcatgca |
324 |
Q |
| |
|
||||||| |
|
|
| T |
36083406 |
tcatgca |
36083412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 36173482 - 36173567
Alignment:
| Q |
24 |
tctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatt |
109 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| ||| ||||| ||||| |||||||||||||| ||||||| ||| ||||| |
|
|
| T |
36173482 |
tctccaagttgaggttttttgtgacgcaaataacgatccaatccatgtttgatagccacacgtgccagcttttcagagtccacatt |
36173567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 36160165 - 36160257
Alignment:
| Q |
18 |
acttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacattt |
110 |
Q |
| |
|
||||| ||||||||| | || |||||||| ||||||||||||| ||| ||||| ||||| ||||| |||||||| ||||||| ||| |||||| |
|
|
| T |
36160165 |
acttgctctccaagttgtggctttttgtgacgcaaataacgatccaacccatgattgatagccactcgtgccagcttttcagagtccacattt |
36160257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 255 - 393
Target Start/End: Complemental strand, 26527763 - 26527625
Alignment:
| Q |
255 |
tgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgcaatggtggtggagagtcattttcttttgtct |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
26527763 |
tgagtgaaagcctcttctagtaatagtttgttcttgaattcgtattcaagaatggcttccacttcatgcggtggtggtggagaatcattttcttctgtct |
26527664 |
T |
|
| Q |
355 |
ctgcatcagtctcatcttccttcacgtgtgctacttctt |
393 |
Q |
| |
|
| |||||| |||||| |||||||| |||| || |||||| |
|
|
| T |
26527663 |
ccgcatcattctcattttccttcatgtgttcttcttctt |
26527625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 10489788 - 10489715
Alignment:
| Q |
24 |
tctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttc |
97 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| || ||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
10489788 |
tctccaagttgaggctttttgtgtcgcaaataaccatccaacccatgtttgatagccacacgtgccagtttttc |
10489715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 17453728 - 17453819
Alignment:
| Q |
18 |
acttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatt |
109 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||| |||||| || ||| ||||| |
|
|
| T |
17453728 |
acttgctctgcaagttgaggttttttgtgtcgcaaataacgacccaacccatgtttgatagccacacgtgcgtgttttttagagtccacatt |
17453819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 17454787 - 17454712
Alignment:
| Q |
24 |
tctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcag |
99 |
Q |
| |
|
||||||||| |||| ||||||||| |||||||||||| ||| ||||| ||||| || |||| |||||||||||||| |
|
|
| T |
17454787 |
tctccaagttgaggctttttgtgttgcaaataacgatccaacccatgtttgatagctacacatgccagtttttcag |
17454712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University