View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_high_23 (Length: 415)
Name: NF2371_high_23
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 79 - 397
Target Start/End: Original strand, 8261930 - 8262248
Alignment:
| Q |
79 |
cctacccactcattatccattgattttaagcaagagcttccaagagagcaacaaaagcagatacaggatttccaaaaatagctgaaaatattagcttgaa |
178 |
Q |
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| T |
8261930 |
cctacccactcgttatccattgattttaagcaagagcttccaatagagcaacaaaagcagatacaggatttccaaaaatagctgaaaatattagcttgaa |
8262029 |
T |
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| Q |
179 |
caccacaacagctatctttgtgtacttgctcatagtcgttgctctccttgaaattcttgaactttgatccatttccaagcttgtgagtgcaagttgagtt |
278 |
Q |
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| T |
8262030 |
caccacaacagctatctttgtgtacttgcttatagtcctttctctacttgcaattcttgaactttgatccatttccaagcttgtgagtgcaagttgagtt |
8262129 |
T |
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| Q |
279 |
tccctatcactcatagaagttgaatttgtaattgacctatctccttgagaaaaataannnnnnntccagttctcaagtatcaaagccttgaaacaagaca |
378 |
Q |
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| T |
8262130 |
tccctatcactcatagaagttgaatttgtaattgacctatctccttgagaaaaataaccccccctccagttctcaagtatcaaagccttgaaacaagaca |
8262229 |
T |
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| Q |
379 |
catgataagtagaatttcc |
397 |
Q |
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| T |
8262230 |
catgataactagaatttcc |
8262248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 8280344 - 8280249
Alignment:
| Q |
134 |
agcagatacaggatttccaaaaatagctgaaaatattagcttgaacaccacaacagctatctttgtgtacttgctcatagtcgttgctctccttga |
229 |
Q |
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| T |
8280344 |
agcagatatagggtttccaaaaatagctgaaaatagtagcttgaaaatcacaacagctatctttgtgtacttgctcatagtccttgttcttcttga |
8280249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 397
Target Start/End: Complemental strand, 8322765 - 8322719
Alignment:
| Q |
351 |
tcaagtatcaaagccttgaaacaagacacatgataagtagaatttcc |
397 |
Q |
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| T |
8322765 |
tcaagtatcaaagccttgaaacaagacacatgataactagaatttcc |
8322719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 8322955 - 8322894
Alignment:
| Q |
137 |
agatacaggatttccaaaaatagctgaaaatattagcttgaacaccacaacagctatctttg |
198 |
Q |
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| T |
8322955 |
agatataggatttccaaaaatagctgaaaatattagtttgaacgccactactgccatctttg |
8322894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 8280223 - 8280153
Alignment:
| Q |
315 |
ctatctccttgagaaaaataannnnnnntccagttctcaagtatcaaagccttgaaacaagacacatgata |
385 |
Q |
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| T |
8280223 |
ctatctccttcagaaaaataacccatcctccaattctgaagaatcaaatccttgaaacaagacacatgata |
8280153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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