View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_high_3 (Length: 736)
Name: NF2371_high_3
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 528
Target Start/End: Original strand, 6586855 - 6587375
Alignment:
| Q |
8 |
gagcacagacctactattattttccaattataggattgggaaatgtacaatccaaactattaattggcatcatatatctattggattatcataatagtnn |
107 |
Q |
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| T |
6586855 |
gagcacagacctactattattttccaattataggattcggaaatgtacaatccaaactattaattggcatcatatatctattggattatcataatagtaa |
6586954 |
T |
|
| Q |
108 |
nnnnnntattctgccatttttctttaaacnnnnnnnatagaaccatcaaataaaaaggatcttaagttcatagttttcactaacaataacagatatcaac |
207 |
Q |
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| T |
6586955 |
aaaaaaaattctgccatttttctttaaactttttttatagaaccatcaaataaaaaggatgttaagttcatagttttcactaacaataacagatatcaac |
6587054 |
T |
|
| Q |
208 |
attaaccggtttaattttaaatcatccctagggaacttttgctggtgttaggccttgctgtactctaatttaatagggatctggttagagtttcacccac |
307 |
Q |
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| T |
6587055 |
attaaacggtttaattttaaatcatccctagggaacttttgctggtgttaggccttgctgtactctaatttaatagggatctggttagagtttcacccac |
6587154 |
T |
|
| Q |
308 |
atgcaccggttcttaatgaattcatgttagaattctgttaacaagataactgaatcagtcatcctaattaaaccttacatatagtggcaatccttgttat |
407 |
Q |
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| T |
6587155 |
atgcaccggttcttaatgaattcttgttagaattctgttaacaagataactgaatcagtcatcctaattaaaccttacatatagtggcaatccttgttat |
6587254 |
T |
|
| Q |
408 |
taggttcttaaatgttttcttgttagaattctgtttaagttgagctttagtgtccttttataggttgatttaattatttggcatgacaagctccaaaacc |
507 |
Q |
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| T |
6587255 |
taggttcttaaatgttttcttgttagaattctgtttaagttgagctttagtgtccttttataggttaatttaattatttggcatgacaagctccaaaacc |
6587354 |
T |
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| Q |
508 |
atatcaaaaactagattaaaa |
528 |
Q |
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| T |
6587355 |
atatcaaaaactagattaaaa |
6587375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 6436659 - 6436578
Alignment:
| Q |
179 |
agttttcactaacaataacagatatcaacattaaccggtttaatt-ttaaatcatccctagggaacttttgctggtgttagg |
259 |
Q |
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| T |
6436659 |
agttttcacaaataataaaagatatcaacacttacctgtttaattattaaattatcgctagggaactttttcttgtgttagg |
6436578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 513
Target Start/End: Original strand, 6595829 - 6595862
Alignment:
| Q |
480 |
attatttggcatgacaagctccaaaaccatatca |
513 |
Q |
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| T |
6595829 |
attatttggcaggacaagctccaaaaccatatca |
6595862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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