View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_high_30 (Length: 390)

Name: NF2371_high_30
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_high_30
NF2371_high_30
[»] chr1 (3 HSPs)
chr1 (18-184)||(32623372-32623544)
chr1 (273-382)||(32623187-32623296)
chr1 (283-353)||(31412443-31412513)
[»] chr4 (5 HSPs)
chr4 (281-353)||(19987643-19987715)
chr4 (283-353)||(19987939-19988009)
chr4 (283-341)||(41206465-41206523)
chr4 (283-355)||(38978713-38978785)
chr4 (305-355)||(7833803-7833853)
[»] chr8 (4 HSPs)
chr8 (283-353)||(22576660-22576729)
chr8 (283-355)||(21397237-21397309)
chr8 (283-355)||(21791730-21791802)
chr8 (307-355)||(15937858-15937906)
[»] chr7 (6 HSPs)
chr7 (292-358)||(2196756-2196822)
chr7 (307-355)||(2414354-2414402)
chr7 (283-358)||(7734345-7734420)
chr7 (307-355)||(25194012-25194060)
chr7 (307-351)||(2304920-2304964)
chr7 (281-353)||(23071742-23071814)
[»] chr5 (2 HSPs)
chr5 (283-352)||(36975926-36975995)
chr5 (283-353)||(36976219-36976289)
[»] chr6 (1 HSPs)
chr6 (291-340)||(1702223-1702272)
[»] chr2 (1 HSPs)
chr2 (299-355)||(14914473-14914529)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 32623544 - 32623372
Alignment:
Q  18 actccaagcatctaaaactaacaattgtttcctggcata--aaggaaataagcctatat----catatcattagcaatagttttgttcaatacatgtcag 111  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  32623544 actccaagcatctaaaactaacaattgtttcctggcatataaaggaaataagcctatatatatcatatcattagcaatagttttgttcaatacatgtcag 32623445  T
Q  112 tataataatgttaaaaacagagaacttttcatagacgtagctgctttagctaaattatgagctactacgttaa 184  Q
     |||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  32623444 gataataatgttaaaaacagataacttttcatagatgtagctgctttaactaaattatgagctactacgttaa 32623372  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 273 - 382
Target Start/End: Complemental strand, 32623296 - 32623187
Alignment:
Q  273 gagagatctttgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaatagaataatagtcgatta 372  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  32623296 gagagatctttgttaggtgtcccatgtcgaaaagataaaaatgtttgatatggtatttaagacatgagattctcacacctaatagaataatagtcgatta 32623197  T
Q  373 aggtttagaa 382  Q
    ||||||||||    
T  32623196 aggtttagaa 32623187  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 31412513 - 31412443
Alignment:
Q  283 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccaccta 353  Q
    ||||||| ||||||| ||||| |||| |||||| ||||||||||| ||||| | ||||  |||||||||||    
T  31412513 tgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccgtgaggttctcccaccta 31412443  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 19987643 - 19987715
Alignment:
Q  281 tttgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccaccta 353  Q
    ||||||||| ||||||| ||||| |||| |||||||||||||||||| ||||| ||||||  |||||||||||    
T  19987643 tttgttaggagtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcccaccta 19987715  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 19987939 - 19988009
Alignment:
Q  283 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccaccta 353  Q
    ||||||| ||||||| ||||| |||| |||||| ||||||||||| ||||| ||||||  |||||||||||    
T  19987939 tgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccatgaggttctcccaccta 19988009  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 41206465 - 41206523
Alignment:
Q  283 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgaga 341  Q
    ||||||| ||||||  ||||| |||||||| |||||||||||||||||||| |||||||    
T  41206465 tgttaggcgtcccatatcgagtagataaaagtgtttgatgtggtatttaagtcatgaga 41206523  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 38978713 - 38978785
Alignment:
Q  283 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 355  Q
    ||||||| ||||||| | ||| |||||||| |||||||||||||| ||||  |||||| |||| |||||||||    
T  38978713 tgttaggagtcccacatggagtagataaaagtgtttgatgtggtacttaaaccatgaggctcttccacctaat 38978785  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 7833853 - 7833803
Alignment:
Q  305 agataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 355  Q
    |||||||| || ||||||||||| ||||| |||||| ||||||||||||||    
T  7833853 agataaaagtgcttgatgtggtacttaagtcatgaggctctcccacctaat 7833803  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 22576729 - 22576660
Alignment:
Q  283 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccaccta 353  Q
    ||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||| |||| ||||||||||||||    
T  22576729 tgttaggagtcccacatcgagtagataaaaatgcttgatgtggtagttaagccatg-gactctcccaccta 22576660  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 21397237 - 21397309
Alignment:
Q  283 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 355  Q
    ||||||| ||||||||||||| |||||||| || ||||||||||||||||  || | | ||||||||||||||    
T  21397237 tgttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaat 21397309  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 355
Target Start/End: Original strand, 21791730 - 21791802
Alignment:
Q  283 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 355  Q
    ||||||| ||||||||||||| |||||||| || ||||||||||||||||  || | | ||||||||||||||    
T  21791730 tgttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaat 21791802  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 15937906 - 15937858
Alignment:
Q  307 ataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 355  Q
    |||||| || ||||||||||| ||||| |||||| ||||||||||||||    
T  15937906 ataaaattgcttgatgtggtacttaagccatgagtctctcccacctaat 15937858  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 2196756 - 2196822
Alignment:
Q  292 tcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaataga 358  Q
    |||||| ||||| ||||||||| | ||||||||||| ||||| ||||||||||| ||||||||||||    
T  2196756 tcccacatcgagtagataaaaaagcttgatgtggtacttaagtcatgagactcttccacctaataga 2196822  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 2414402 - 2414354
Alignment:
Q  307 ataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 355  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||||||    
T  2414402 ataaaattgtttaatgtggtatttaagtcatgagactctcccacctaat 2414354  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 7734420 - 7734345
Alignment:
Q  283 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaataga 358  Q
    ||||||| |||| || ||||| ||||||||||| |||||||||||||||||  |||||||  || |||||||||||    
T  7734420 tgttaggagtcctacatcgagtagataaaaatgcttgatgtggtatttaagcaatgagacattctcacctaataga 7734345  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 25194012 - 25194060
Alignment:
Q  307 ataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 355  Q
    ||||||||||||||||||||| ||||| |||||| |||| |||||||||    
T  25194012 ataaaaatgtttgatgtggtacttaagccatgaggctcttccacctaat 25194060  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 2304920 - 2304964
Alignment:
Q  307 ataaaaatgtttgatgtggtatttaagacatgagactctcccacc 351  Q
    |||||| ||||||||||| |||||||| |||||| ||||||||||    
T  2304920 ataaaagtgtttgatgtgatatttaagtcatgaggctctcccacc 2304964  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 23071742 - 23071814
Alignment:
Q  281 tttgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccaccta 353  Q
    ||||||||| ||||| | ||||| |||| |||||||||||||||||| ||||  |||||   |||||||||||    
T  23071742 tttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtacttaaaccatgaagttctcccaccta 23071814  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 36975926 - 36975995
Alignment:
Q  283 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacct 352  Q
    ||||||| ||||||| ||||| |||| ||| |||||||||||||||||||| ||| || |||||||||||    
T  36975926 tgttaggagtcccacatcgagtagatcaaagtgtttgatgtggtatttaagtcataaggctctcccacct 36975995  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 36976219 - 36976289
Alignment:
Q  283 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccaccta 353  Q
    ||||||| ||| ||| ||||| |||| ||| ||||||||||| |||||||| ||  |||||||||||||||    
T  36976219 tgttaggagtctcacatcgagtagatcaaagtgtttgatgtgatatttaagtcacaagactctcccaccta 36976289  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 1702272 - 1702223
Alignment:
Q  291 gtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgag 340  Q
    ||||||| ||||| |||| |||||||||||||||||| ||||| ||||||    
T  1702272 gtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgag 1702223  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 14914529 - 14914473
Alignment:
Q  299 tcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 355  Q
    ||||| ||||||||||||| || |||||| ||||| ||||||||| ||| |||||||    
T  14914529 tcgagtagataaaaatgttcgacgtggtacttaagtcatgagactttcctacctaat 14914473  T

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