View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_high_35 (Length: 370)
Name: NF2371_high_35
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 25 - 349
Target Start/End: Complemental strand, 43069233 - 43068884
Alignment:
| Q |
25 |
gatattgttgcctttggagtgcacaagtaccggccaaagcttttgcatgatttctttttgtttctgtaatttggtctctctaatttcttagaaagatctt |
124 |
Q |
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| T |
43069233 |
gatattgttgcctttggagtgcacaagtaccggccaaagcttttgcatgatttctttttgtttctgtaatttggtctctctaatttcttagaaagatctt |
43069134 |
T |
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| Q |
125 |
ctacactctgcactctagctaaagaaccaaaagattgtgccttcccttgataaaacatagacaatcctctcctgcaaatgtcacaataaatatatagaat |
224 |
Q |
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| T |
43069133 |
ctacactctgcactctagctaaagaaccaaaagattgtgccttcccttgataaaacatagacaatcctctcctgcaaatgtcacaataaatatatagaat |
43069034 |
T |
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| Q |
225 |
tgaattaaagtacaacaaaatattcatatagaatataa---------------------aaatgcatcatgcatgagaa----atattgcttacttcaaa |
299 |
Q |
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| T |
43069033 |
tgaattaaagtacaacaaaatattcatatagaatataaaaattatatatatagcaaaaaaaatgcatcatgcatgagaaatatatattgcttacttcaaa |
43068934 |
T |
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| Q |
300 |
gggagatggttcataagttctgatagttcatataagggaccatttgaatg |
349 |
Q |
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| T |
43068933 |
gggagatggttcataagttctgatagttcatataagggaccatttgaatg |
43068884 |
T |
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Back To:
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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 34038218 - 34038268
Alignment:
| Q |
157 |
gattgtgccttcccttgataaaacatagacaatcctctcctgcaaatgtca |
207 |
Q |
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| T |
34038218 |
gattgagccttcccttgataaaacattgacaaccctctcctgcaaaagtca |
34038268 |
T |
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