View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_high_36 (Length: 360)
Name: NF2371_high_36
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 6991080 - 6990731
Alignment:
| Q |
1 |
ccttttctttttcttgtgattttgcaggtcttctaatcaaggcaattctggtgagtaaactgttttacctatttcttgctagtttttatcctattgttga |
100 |
Q |
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| T |
6991080 |
ccttttctttttcttgtgattttgcaggtcttctaatcaaggcaattctggtgagtaaactgttttacctatttctggctagtttttatcctattgttga |
6990981 |
T |
|
| Q |
101 |
tccatgcatccatgcatttaatgcgacaaatttaagatgcaatagtacacaaacagttttctccctagaactagaacaaatgttagtgatctgctacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6990980 |
tccatgcatccatgcatttaatgcgacaaatttaagatgcaatagtacacaaacagttttctccctagaactagaaaaaatgttagtgatctgctacatg |
6990881 |
T |
|
| Q |
201 |
catgtaatagcactgagaaagaacatgcacacttgcatatatatttttggcattgacttatgtgtttaaaactgttacaacagaaatcatcggtgtctga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6990880 |
catgtaatagcactgagaaagaacatgcacacttgcatatatatttttggcattgacttatgtgtttaaaactgttacaacagaaatcatcggtgtctga |
6990781 |
T |
|
| Q |
301 |
ttttattttgtgttaatgaacaggtaaatcatctgtaacatgtgcctatg |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6990780 |
ttttattttgtgttaatgaacaggtaaatcatctgtaacatgggcctatg |
6990731 |
T |
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