View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_high_37 (Length: 349)
Name: NF2371_high_37
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 39 - 330
Target Start/End: Complemental strand, 31659044 - 31658753
Alignment:
| Q |
39 |
ctgtgaagcaatcaaacatgttcaaagaactcaagagaaccctccattgtataggactgcatattatggccatcacacttgcaaaagttatttgcattca |
138 |
Q |
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| T |
31659044 |
ctgtgaagcaatcaaacatgttgaaagaactcaagagaaccctccattgtataggactgcatattatggccatcacacttgcaaaagttatttgcattca |
31658945 |
T |
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| Q |
139 |
gatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacattccaattaaagaagaaaactcgtttccaccat |
238 |
Q |
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| T |
31658944 |
gatataaatttggaatccattttgtcatcaaatgactcttctatattacttagttttgataacaacattccaattaaagaagaaaactcgtttccaccat |
31658845 |
T |
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| Q |
239 |
caccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctcatcagat |
330 |
Q |
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| T |
31658844 |
caccattgccatttcttgcatctacaaaagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctcatcagat |
31658753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 40 - 207
Target Start/End: Original strand, 31657175 - 31657342
Alignment:
| Q |
40 |
tgtgaagcaatcaaacatgttcaaagaactcaagagaaccctccattgtataggactgcatattatggccatcacacttgcaaaagttatttgcattcag |
139 |
Q |
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| T |
31657175 |
tgtgaagcaatcaaacatgttcaaagaattcaagagaaccctcctttgtaccggactacatattatgaccatcacacttgcaaaagctcttaccattcag |
31657274 |
T |
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| Q |
140 |
atataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacatt |
207 |
Q |
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| T |
31657275 |
acataaaattggaatccattttgtgctacgatgactcttctatattacttagtttcgataacaacatt |
31657342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 324
Target Start/End: Original strand, 31650164 - 31650457
Alignment:
| Q |
40 |
tgtgaagcaatcaaacatgttcaaagaactcaagagaaccctccattgtataggactgcatattatggccatcacacttgcaaaagttatttgcattcag |
139 |
Q |
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| T |
31650164 |
tgtgaagcaatcaaacatgttcaaagaatacaaaagaacccttcgttgtaccggactacatattatggccatcacacttgcaaaagctcttaccattcag |
31650263 |
T |
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| Q |
140 |
atataaatttggaatccattgtgtcatcaaa---tgactcttctatattactcagttt---tgataacaacattccaattaaagaagaaaactcgtttcc |
233 |
Q |
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| T |
31650264 |
acttaaatttggaatcaattttctcctatgatgttgactcttcaatattacttagtttcgataataacaacatttcaaataaacaagaatatccatttcg |
31650363 |
T |
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| Q |
234 |
accat---caccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctca |
324 |
Q |
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| T |
31650364 |
accatcaccaccattgccacttcttgcatctacaaaaggagatcccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctca |
31650457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 31628832 - 31628760
Alignment:
| Q |
52 |
aaacatgttcaaagaactcaagagaaccctccattgtataggactgcatattatggccatcacacttgcaaaa |
124 |
Q |
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| T |
31628832 |
aaacatgtgcaaagaattcaagaggaccctccattatacagaaccatatattatggccatcataattgcaaaa |
31628760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 31657390 - 31657434
Alignment:
| Q |
243 |
attgccatttcttgcatctacaatagaggatcctaaggaagagat |
287 |
Q |
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| T |
31657390 |
attgccacttcttgcatctacaaaagaggaacccaaggaagagat |
31657434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 31678547 - 31678631
Alignment:
| Q |
40 |
tgtgaagcaatcaaacatgttcaaagaactcaagagaaccctccattgtataggactgcatattatggccatcacacttgcaaaa |
124 |
Q |
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| T |
31678547 |
tgtgaagctatgaaacatgtgcagagaattcaagaggaccctccattatacagaaccatatattatggccatcatagttgcaaaa |
31678631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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