View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2371_high_38 (Length: 348)
Name: NF2371_high_38
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_38 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 38322840 - 38322527
Alignment:
| Q |
16 |
atgaagtattgatgctaagaagcaacgaccatcagcagcaagtgaaacaaggtataagaactatacctgaagctcttaccttcagagaagccaaaaccac |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38322840 |
atgaagtattgatgctaagaagcaacggccatcagcagcaagtgaaacaaggtataagaactatacctgaagctcttaccttcagagaagccaaaaccac |
38322741 |
T |
|
| Q |
116 |
tagatgtagttaaaatcattaaccttttgggttacaactacaaccaaaaatctatgaactgtttcaatttctagtacataagccatgttgaacaaacctt |
215 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38322740 |
tagatgtagttagaatcattaaccttttgggttacaactacaaccaaaaatctatgaactgtttcaatttctagtacataagccatgttgaacaaacctt |
38322641 |
T |
|
| Q |
216 |
gtaattgtatactcttcaatgacaggagtatatgccagtagacttaataataaggaaatgtggagaatcaaaagatggaacccaaaagccaaatgcaaga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38322640 |
gtaattgtatactcttcaatgacaggagtatatgccagtagacttaataataaggaaatgtggagaatcaaaagatggaacccaaaagccgaatgcaaga |
38322541 |
T |
|
| Q |
316 |
gctagaagctctac |
329 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38322540 |
gctagaagctctac |
38322527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 38318568 - 38318495
Alignment:
| Q |
156 |
caaccaaaaatctatgaactgtttcaatttctagtacat----aagccatgttgaacaaaccttgtaattgtat |
225 |
Q |
| |
|
||||||||||||| || |||||||||||||||| ||||| | || |||||||||||||||||||||||||| |
|
|
| T |
38318568 |
caaccaaaaatctttgtactgtttcaatttctaatacatgcataggctatgttgaacaaaccttgtaattgtat |
38318495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 38315358 - 38315286
Alignment:
| Q |
257 |
acttaataataaggaaatgtggagaatcaaaagatggaacccaaaagccaaatgcaagagctagaagctctactg |
331 |
Q |
| |
|
||||||| |||| ||||| |||| ||||||| ||||||||||||||| ||||||||||| | |||| |||||||| |
|
|
| T |
38315358 |
acttaattataaagaaatctggaaaatcaaa-gatggaacccaaaag-caaatgcaagaacaagaatctctactg |
38315286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 38848560 - 38848609
Alignment:
| Q |
176 |
gtttcaatttctagtacataagccatgttgaacaaaccttgtaattgtat |
225 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
38848560 |
gtttcaatttctagtacatagactatgttgaacaaaccttttaattgtat |
38848609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 38848652 - 38848699
Alignment:
| Q |
279 |
agaatcaaaagatggaacccaaaagccaaatgcaagagctagaagctct |
327 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
38848652 |
agaatcaaaagatagaacccaaaa-ccaaatgcaagaactagaagctct |
38848699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University