View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_high_4 (Length: 625)
Name: NF2371_high_4
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 16 - 585
Target Start/End: Original strand, 31708777 - 31709343
Alignment:
| Q |
16 |
agagagataccttaacaacatcgtcaaactcatcagaaggagaaattggtggactatctgttcctgttaaagaaccaccatttaatggttcactgctatg |
115 |
Q |
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| T |
31708777 |
agagagataccttaacaacatcgtcaaactcatcagaaggagaaattggtggactatctgttcctgttaaagaaccaccatttaatggttcactgctatg |
31708876 |
T |
|
| Q |
116 |
agacaatctacctgatgttaatggagacacttcctgttacataaaacaaactttaaaaccaaaaccttaaaaagaataacaatgtctcaaactagtaaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31708877 |
agacaatctacctgatgttaatggagacacttcctgttacataaaacaaactttaaaaccaaaaccttaaaaagaataacaatgtctcaaactagtaaat |
31708976 |
T |
|
| Q |
216 |
aacttgcatttgtttttccacaactcttttactacctctcttgcggattgtgtcatgatacgttcaaggacaagctgtgaagtagttgcagtagcaaaag |
315 |
Q |
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| T |
31708977 |
aacttgcatttgtttttccacaactcttttactacctctcttgcggattgtgacatgatacgttcaaggacaagctgtgaagtagttgaagtagcaaaag |
31709076 |
T |
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| Q |
316 |
agaattgatttccacacatgtttgagaattcttgagaaagagtactagtaatagtttcttcaggaatagagttagtagaagccttagaaggaggaggagg |
415 |
Q |
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| T |
31709077 |
agaattgatttccacacatgtttgagaattcttgagaaagag---tagtaatagtttcttcaggaatagagttagtagaagccttagaaggaggaggagg |
31709173 |
T |
|
| Q |
416 |
ggttggtggttgaggtgacaatgctttagagacctcaaaagctgaggcactccatgatcttgaaagaaactccattggtattctaggactctctggcaaa |
515 |
Q |
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| T |
31709174 |
gggtggtggttgaggtgacaatgctttagagacctcaaaagctgaggcactccatgatcttgaaagaaactccattggtattctaggactctctggcaaa |
31709273 |
T |
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| Q |
516 |
cgtgtgttgccattgtttgttgttggaaggaactcatttctgtgacaatggatagttaactttggttcca |
585 |
Q |
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| T |
31709274 |
cgtgtattgccattgtttgttgttggaaggaactcatttctgtgacaatggatagttaactttggttcca |
31709343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 38268207 - 38268073
Alignment:
| Q |
24 |
accttaacaacatcgtcaaactcatcagaaggagaaattggtggactatctgttcctgttaaagaac---caccatttaatggttcactgctatgagaca |
120 |
Q |
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| T |
38268207 |
accttgacaacatcgtcaaattcatctgaatgagaaattgg---actgtctgttccagttaatgaactgccaccattcaaaggttcgctgctgtgagata |
38268111 |
T |
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| Q |
121 |
atctacctgatgttaatggagacacttcctgttacata |
158 |
Q |
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| T |
38268110 |
atctacctgatgttaacggagacacttcctgttacata |
38268073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 508
Target Start/End: Complemental strand, 38267811 - 38267753
Alignment:
| Q |
450 |
tcaaaagctgaggcactccatgatcttgaaagaaactccattggtattctaggactctc |
508 |
Q |
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|||| |||||| ||||||||||||||||| ||||||||||| || | || ||||||||| |
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| T |
38267811 |
tcaagagctgaagcactccatgatcttgacagaaactccataggaactcgaggactctc |
38267753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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