View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_high_40 (Length: 342)

Name: NF2371_high_40
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_high_40
NF2371_high_40
[»] chr1 (4 HSPs)
chr1 (2-329)||(4856335-4856662)
chr1 (52-236)||(26100106-26100290)
chr1 (49-106)||(19709417-19709474)
chr1 (68-133)||(34851561-34851626)
[»] chr6 (2 HSPs)
chr6 (83-259)||(17299998-17300174)
chr6 (99-268)||(6268214-6268383)
[»] chr4 (2 HSPs)
chr4 (41-259)||(21639289-21639512)
chr4 (52-115)||(4225508-4225572)
[»] chr7 (6 HSPs)
chr7 (7-164)||(2814571-2814728)
chr7 (161-268)||(22017709-22017817)
chr7 (120-221)||(22018197-22018298)
chr7 (179-224)||(1879655-1879700)
chr7 (179-224)||(1903428-1903473)
chr7 (42-114)||(2994621-2994693)
[»] scaffold0004 (1 HSPs)
scaffold0004 (83-200)||(119804-119921)
[»] chr8 (2 HSPs)
chr8 (42-202)||(33650515-33650674)
chr8 (43-215)||(42525919-42526091)
[»] chr2 (4 HSPs)
chr2 (41-268)||(42438070-42438298)
chr2 (42-117)||(5676849-5676923)
chr2 (126-201)||(13192121-13192196)
chr2 (144-199)||(39037188-39037243)
[»] chr3 (1 HSPs)
chr3 (67-153)||(32090439-32090525)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 329
Target Start/End: Complemental strand, 4856662 - 4856335
Alignment:
Q  2 gtggctattatgttttcatctatctcttcttttcttcccgtttttgaggttaagctcaacacgagttaaaccccttttgttgtttagacatgatgatgtt 101  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4856662 gtggctattatgttttcatctatttcttcttttcttcccgcttttgaggttaagctcaacacgagttaaaccccttttgttgtttagatatgatgatgtt 4856563  T
Q  102 atgattatctttgcatgcgatttgagagttacaacttcaaaattcttttaaataaagtattttgacgctaatctttgaaagtaaaaattgatcactttta 201  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4856562 atgattatttttgcatgcgatttgagagttacaacttcaaaattcttttaaataaagtattttgacgctaatctttgaaagtaaaaattgatcactttta 4856463  T
Q  202 cctttattgttaaattccctaagactaaaaggagacaagaatagaattgtttgtttaaatgagttatataagtatcaaaaggagaagtaattcccgagac 301  Q
    |||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4856462 cctttattgtcaaatcccctaagactaaaaggagacaggaatagaactgtttgtttaaatgagttatataagtatcaaaaggagaagtaattcccgagac 4856363  T
Q  302 ttgtgagggcgggaagtggttgttgatg 329  Q
    ||||||||| ||||||||||||||||||    
T  4856362 ttgtgagggtgggaagtggttgttgatg 4856335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 236
Target Start/End: Original strand, 26100106 - 26100290
Alignment:
Q  52 taagctcaacacgagttaaaccccttttgttgtttagacatgatgatgttatgattatctttgcatgcgatttgagagttacaacttcaaaattctttta 151  Q
    |||||||| || ||| |||| |||||| || ||||||| ||||||   |||||||  | |||||||  |||| ||||| |||||||||| | ||||||||    
T  26100106 taagctcatcatgagctaaaaccctttagtggtttagaaatgatgggattatgatattatttgcattagattcgagagctacaacttcacacttctttta 26100205  T
Q  152 aataaagtattttgacgctaatctttgaaagtaaaaattgatcacttttacctttattgttaaattccctaagactaaaaggaga 236  Q
    || ||| || | | |||||||||||| |||| |||| ||||||| |||||  |||||||  |||||||| |||||| ||||||||    
T  26100206 aacaaactaatgtaacgctaatctttaaaagcaaaacttgatcatttttatgtttattgccaaattccccaagactgaaaggaga 26100290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 19709417 - 19709474
Alignment:
Q  49 ggttaagctcaacacgagttaaaccccttttgttgtttagacatgatgatgttatgat 106  Q
    ||||||||||| || ||| ||||||| | |||| ||||||||||||||| ||||||||    
T  19709417 ggttaagctcatcatgagctaaacccttcttgtggtttagacatgatgaggttatgat 19709474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 34851561 - 34851626
Alignment:
Q  68 taaaccccttttgttgtttagacatgatgatgttatgattatctttgcatgcgatttgagagttac 133  Q
    |||| |||||| || |||||||||||||||  |||||||||||||| |||  ||| ||||||||||    
T  34851561 taaatccctttagtggtttagacatgatgaaattatgattatcttttcataggatctgagagttac 34851626  T

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Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 83 - 259
Target Start/End: Original strand, 17299998 - 17300174
Alignment:
Q  83 gtttagacatgatgatgttatgattatctttgcatgcgatttgagagttacaacttcaaaattct-tttaaataaagtattttgacgctaatctttgaaa 181  Q
    |||| |||||||||||||||||  |||||||||||  |||||||||||||| |||||||  |||| |||||||||  |||| |   ||| ||||||||||    
T  17299998 gttttgacatgatgatgttatggctatctttgcataagatttgagagttacgacttcaagcttctgtttaaataac-tattatactgctgatctttgaaa 17300096  T
Q  182 gtaaaaattgatcacttttacctttattgttaaattccctaagactaaaaggagacaagaatagaattgtttgtttaa 259  Q
    ||||||||||||||||| ||| |||||||| ||||||| | ||||| ||||||||   ||||  ||||||||||||||    
T  17300097 gtaaaaattgatcacttatacgtttattgtcaaattccatgagactgaaaggagatgtgaatgaaattgtttgtttaa 17300174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 99 - 268
Target Start/End: Complemental strand, 6268383 - 6268214
Alignment:
Q  99 gttatgattatctttgcatgcgatttgagagttacaacttcaaaattcttttaaataaagtattttgacgctaatctttgaaagtaaaaattgatcactt 198  Q
    |||||| |||| |||||||  |||||||||||||||||||||| |||| |||||| ||| |||||| ||  |||| ||| ||||||||| |||| |||||    
T  6268383 gttatggttatatttgcataagatttgagagttacaacttcaagattcctttaaacaaactattttcaccataat-tttaaaagtaaaacttgaccactt 6268285  T
Q  199 ttacctttattgttaaattccctaagactaaaaggagacaagaatagaattgtttgtttaa-atgagttat 268  Q
    |||| || ||||| ||||||| | | ||  ||||||||   ||||  |||||||||||||| |||||||||    
T  6268284 ttacattgattgtgaaattccttgaaaccgaaaggagaagggaatgaaattgtttgtttaatatgagttat 6268214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 41 - 259
Target Start/End: Complemental strand, 21639512 - 21639289
Alignment:
Q  41 gtttttgaggttaagctcaacacgagttaaaccccttttgttgtttagacatgatgatgttatgattatctttgcatgcgatttgagagttacaacttca 140  Q
    ||||||| |||| |||||| ||  || |||| | |||| || ||||||||||||||| ||||||||||| |||||||  |||||||||||||||||||||    
T  21639512 gtttttgtggttgagctcatcataagctaaatctctttagtggtttagacatgatgaggttatgattatatttgcataggatttgagagttacaacttca 21639413  T
Q  141 aa-attctttt----aaataaagtattttgacgctaatctttgaaagtaaaaattgatcacttttacctttattgttaaattccctaagactaaaaggag 235  Q
    ||  |||||||    ||| ||| |||||| ||  |||| ||| ||||||||| || || |||||||| |||||||| ||||||| | ||| | |||||||    
T  21639412 aagcttcttttttaaaaaaaaaatattttcacattaatatttaaaagtaaaacttaattacttttacatttattgtcaaattccatgagattgaaaggag 21639313  T
Q  236 acaagaatagaattgtttgtttaa 259  Q
    |  ||||| |||| ||||||||||    
T  21639312 atgagaatggaatggtttgtttaa 21639289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 4225508 - 4225572
Alignment:
Q  52 taagctcaacacgagttaaacccctt-ttgttgtttagacatgatgatgttatgattatctttgc 115  Q
    |||||||| || ||| |||||||||| |||| ||||||||||||||| ||||||||  |||||||    
T  4225508 taagctcatcatgagctaaaccccttcttgtagtttagacatgatgaggttatgatattctttgc 4225572  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 2814571 - 2814728
Alignment:
Q  7 tattatgttttcatctatctcttcttttcttcccgtttttgaggttaagctcaacacgagttaaaccccttttgttgtttagacatgatgatgttatgat 106  Q
    |||||||||||||||||| |||| ||| |||   ||||||| ||||||||||| ||  ||  ||||||||||  |  |||||||||||||| ||||||||    
T  2814571 tattatgttttcatctatttcttttttactttttgtttttgtggttaagctcatcataagcgaaacccctttaatgatttagacatgatgacgttatgat 2814670  T
Q  107 tatctttgcatgcgatttgagagttacaacttcaaaattcttttaaataaagtatttt 164  Q
    ||| |||||||  |||| |||||||||||||||||  |||||||||| ||| ||||||    
T  2814671 tatatttgcataagattagagagttacaacttcaagcttcttttaaacaaactatttt 2814728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 22017817 - 22017709
Alignment:
Q  161 ttttgacgctaatctttgaaagtaaaaattgatcacttttacctttattgttaaattccctaagactaaaaggagacaagaatagaat-tgtttgtttaa 259  Q
    |||| ||||||||||||||| |||||| |||||||||||||  |||||||  ||||||||| | |||  |||||||  ||||| |||| |||||||||||    
T  22017817 ttttaacgctaatctttgaatgtaaaacttgatcacttttatttttattgccaaattccctgaaacttgaaggagatgagaat-gaatatgtttgtttaa 22017719  T
Q  260 -atgagttat 268  Q
     |||||||||    
T  22017718 tatgagttat 22017709  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 22018298 - 22018197
Alignment:
Q  120 gatttgagagttacaacttcaaaattcttttaaataaagtattttgacgctaatctttgaaagtaaaaattgatcacttttacctttattgttaaattcc 219  Q
    |||||||||| || ||| | || ||| |||| || ||| | |||| ||||||||||||||| |||||| |||||||||||||  |||||||  |||||||    
T  22018298 gatttgagagctaaaacattaagattattttgaacaaattgttttaacgctaatctttgaatgtaaaacttgatcacttttatttttattgccaaattcc 22018199  T
Q  220 ct 221  Q
    ||    
T  22018198 ct 22018197  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 1879655 - 1879700
Alignment:
Q  179 aaagtaaaaattgatcacttttacctttattgttaaattccctaag 224  Q
    ||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  1879655 aaagtaaaacttgatcacttttatctttattgtcaaattccttaag 1879700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 1903428 - 1903473
Alignment:
Q  179 aaagtaaaaattgatcacttttacctttattgttaaattccctaag 224  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||||    
T  1903428 aaagtaaaacttgatcacttttatctttattatcaaattccctaag 1903473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 2994621 - 2994693
Alignment:
Q  42 tttttgaggttaagctcaacacgagttaaaccccttttgttgtttagacatgatgatgttatgattatctttg 114  Q
    |||||| | ||||||||| || ||| |||| ||||||  | ||| ||||||||||||||||||||||| ||||    
T  2994621 tttttgtgtttaagctcatcatgaggtaaatccctttaatagttaagacatgatgatgttatgattatgtttg 2994693  T

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Target: scaffold0004 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 119804 - 119921
Alignment:
Q  83 gtttagacatgatgatgttatgattatctttgcatgcgatttgagagttacaacttcaaaattcttttaaataaagtattttgacgctaatctttgaaag 182  Q
    |||||||||||||||||||||||   ||||||| |  |||| ||||| |||||||||  | |||||||| | ||| |||||  | ||||| |||||||||    
T  119804 gtttagacatgatgatgttatgagattctttgcttaagattcgagagctacaacttcgcacttcttttatacaaattatttgaatgctaaactttgaaag 119903  T
Q  183 taaaaattgatcactttt 200  Q
    ||||| ||||||||||||    
T  119904 taaaacttgatcactttt 119921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 33650674 - 33650515
Alignment:
Q  42 tttttgaggttaagctcaacacgagttaaaccccttttgttgtttagacatgatgatgttatgattatctttgcatgcgatttgagagttacaacttcaa 141  Q
    |||||| ||||| ||||| || ||| ||||||||||| || ||| |||||||| || |||||| |||| |||||||  | |||||  ||| || |||| |    
T  33650674 tttttgtggttatgctcatcatgagctaaacccctttagtggttgagacatgacgaggttatggttatgtttgcataagttttgaatgttgcatcttcga 33650575  T
Q  142 aattcttttaaataaagtattttgacgctaatctttgaaagtaaaaattgatcacttttac 202  Q
      |||||||||||||| |||| | | ||||||| || ||||||||| ||||||||||||||    
T  33650574 gcttcttttaaataaattattctcatgctaatc-ttaaaagtaaaacttgatcacttttac 33650515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 215
Target Start/End: Original strand, 42525919 - 42526091
Alignment:
Q  43 ttttgaggttaagctcaacacgagttaaaccccttttgttgtttagacatgatgatgttatgattatctttgcatgcgatttgagagttacaacttcaaa 142  Q
    ||||| |||||| |||| || ||| |||||  ||||  ||||||||||||||||| ||||||||||| |||| ||  |||| |||| |||   ||||||     
T  42525919 ttttgtggttaaactcatcatgagctaaacttctttaattgtttagacatgatgaggttatgattatatttgtataagattagagaattatcgcttcaag 42526018  T
Q  143 attcttttaaataaagtattttgacgctaatctttgaaagtaaaaattgatcacttttacctttattgttaaa 215  Q
     || ||||||| ||| |||||| | | |||||||| ||||||||| ||||  |||||||| ||||||| ||||    
T  42526019 cttattttaaacaaactattttaatgataatctttaaaagtaaaatttgacaacttttacatttattgctaaa 42526091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 268
Target Start/End: Original strand, 42438070 - 42438298
Alignment:
Q  41 gtttttgaggttaagctcaacacgagttaaaccccttttgttgtttagacatgatgatgttatgattatctttgcatgcgatttgagagttacaacttca 140  Q
    |||||||  |||||||||| || ||| ||||||||||| || ||| ||||||| ||   |||||||||| |||||||  | ||  |  ||| |||| |||    
T  42438070 gtttttgtagttaagctcatcatgagctaaacccctttagtggttgagacatggtgcaattatgattatatttgcataagtttataacgttgcaacatca 42438169  T
Q  141 aaattcttttaaataaagtattttgacgctaatctttgaaagtaaaaattgatcacttttacctttattgttaaattccctaagactaaaaggagacaag 240  Q
    |  |||||||||| ||| |||||| ||||| | |||| | ||||||| |||||||||||||| |||||||  ||||| | | |||||| ||| |||   |    
T  42438170 agcttcttttaaacaaattatttttacgcttacctttcagagtaaaacttgatcacttttacatttattgccaaatttcatgagactagaagaagatgtg 42438269  T
Q  241 aatagaattgtttgtttaa-atgagttat 268  Q
    |||  |||||||||||||| |||||||||    
T  42438270 aatgaaattgtttgtttaatatgagttat 42438298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 5676923 - 5676849
Alignment:
Q  42 tttttgaggttaagctcaacacgagttaaaccccttttgttgtttagacatgatgatgttatgattatctttgcat 117  Q
    |||||| | ||||||||| || ||| |||||||||||| | ||| ||||||||||||||||||||||| |||||||    
T  5676923 tttttgtgtttaagctcatcatgagctaaacccctttt-tggttaagacatgatgatgttatgattatgtttgcat 5676849  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 13192121 - 13192196
Alignment:
Q  126 agagttacaacttcaaaattcttttaaataaagtattttgacgctaatctttgaaagtaaaaattgatcactttta 201  Q
    ||||||||||||||||| |||||||||||||| |||||| | | | || ||| ||||||| | |||||||||||||    
T  13192121 agagttacaacttcaaacttcttttaaataaactattttaatgatgatatttaaaagtaacacttgatcactttta 13192196  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 39037188 - 39037243
Alignment:
Q  144 ttcttttaaataaagtattttgacgctaatctttgaaagtaaaaattgatcacttt 199  Q
    |||||||||| ||| |||||| ||| | |||||| |||||||||||||||||||||    
T  39037188 ttcttttaaagaaattattttcacgttgatctttaaaagtaaaaattgatcacttt 39037243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 32090525 - 32090439
Alignment:
Q  67 ttaaaccccttttgttgtttagacatgatgatgttatgattatctttgcatgcgatttgagagttacaacttcaaaattcttttaaa 153  Q
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T  32090525 ttaaacacctttagtggtttagacataacgaggttatgattatatttgcataagatttgagggttacaacttcaaacttattttaaa 32090439  T

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