View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_high_42 (Length: 336)

Name: NF2371_high_42
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_high_42
NF2371_high_42
[»] chr3 (4 HSPs)
chr3 (14-322)||(22750293-22750601)
chr3 (37-314)||(22726982-22727259)
chr3 (31-314)||(22739718-22740001)
chr3 (137-314)||(22740667-22740844)
[»] chr5 (4 HSPs)
chr5 (14-314)||(14372474-14372774)
chr5 (37-322)||(41451585-41451870)
chr5 (64-315)||(14240583-14240834)
chr5 (45-315)||(41438423-41438693)
[»] scaffold0019 (1 HSPs)
scaffold0019 (257-322)||(7954-8019)
[»] chr6 (3 HSPs)
chr6 (257-322)||(11672968-11673033)
chr6 (259-322)||(11663913-11663976)
chr6 (280-322)||(11709511-11709553)
[»] chr8 (2 HSPs)
chr8 (235-315)||(2301233-2301313)
chr8 (235-315)||(2325452-2325532)
[»] scaffold0196 (1 HSPs)
scaffold0196 (259-322)||(13483-13546)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 22750601 - 22750293
Alignment:
Q  14 agatatcaggtattttaaaagtgtgtggtacaaaggcttatgtagcacagtcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaa 113  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22750601 agatatcagggattttaaaagtgtgtggtacaaaggcttatgtagcacagtcgccatggatacaaagtagcaagatagaaaataacatattgtttgggaa 22750502  T
Q  114 ggatatggaaaggcaaagatatgagaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750501 ggatatggaaaggcaaagatatgagaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggag 22750402  T
Q  214 aggggaataaatttgagcggcggacagaaacaaagagtacaaattgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750401 aggggaataaatttgagcggcggacagaaacaaagagtacaaattgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtg 22750302  T
Q  314 ctcttgatg 322  Q
    |||||||||    
T  22750301 ctcttgatg 22750293  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 37 - 314
Target Start/End: Complemental strand, 22727259 - 22726982
Alignment:
Q  37 tgtggtacaaaggcttatgtagcacagtcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaaggcaaagatatg 136  Q
    ||||| |||||||||||||| || || ||||| |||||||| ||| ||||||||||| |||| ||| | ||||| |  || ||||| ||| |||  |||     
T  22727259 tgtggaacaaaggcttatgttgctcaatcaccgtggatacagagtggcaagatagaagataatatactatttggtagagagatggatagggaaaagtatt 22727160  T
Q  137 agaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgagcggcgg 236  Q
    |||||||||| |||||||||||| | ||||| || |||||| ||||| ||||||| ||||| || ||||| || |||| |||||| |||||||| || ||    
T  22727159 agaaggttctagaagcatgttcattgaagaaagacctcgaggttttaccatttggtgatcagaccattattggagagaagggaatcaatttgagtggtgg 22727060  T
Q  237 acagaaacaaagagtacaaattgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgc 314  Q
    |||||| |||||||||||||| ||||||||| | || ||||||||||||||||||||  | || ||||| ||||||||    
T  22727059 acagaagcaaagagtacaaatcgctcgtgctctttaccaagatgctgatatatatctgctcgacgatccctttagtgc 22726982  T

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Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 314
Target Start/End: Original strand, 22739718 - 22740001
Alignment:
Q  31 aaagtgtgtggtacaaaggcttatgtagcacagtcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatgga-aaggcaa 129  Q
    ||||||||||| |||||||||||||| || || || ||||||||||| ||| ||||||||||| | || ||| | ||||| |  || ||||| |||| ||    
T  22739718 aaagtgtgtggaacaaaggcttatgttgctcaatcgccatggatacagagtggcaagatagaagagaatatactatttggtagagagatggataaggaaa 22739817  T
Q  130 agatatgagaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttga 229  Q
    || |||||||||||||| |||||||||||| | ||||| || |||||| ||||| ||||| | |||||||| ||||| || ||||  ||||| |||||||    
T  22739818 ag-tatgagaaggttctagaagcatgttcattgaagaaagacctcgaggttttaccatttcgtgatcaaaccattattggagagaaaggaatcaatttga 22739916  T
Q  230 gcggcggacagaaacaaagagtacaaattgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgc 314  Q
    | || ||||||||||||||||||||||||||||||||| | || ||| |||||||||| |||||  | || ||||| ||||||||    
T  22739917 gtggtggacagaaacaaagagtacaaattgctcgtgctctttaccaaaatgctgatatttatctgctcgacgatccctttagtgc 22740001  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 137 - 314
Target Start/End: Original strand, 22740667 - 22740844
Alignment:
Q  137 agaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgagcggcgg 236  Q
    |||||||||| |||||||||||| | ||||| || |||||| ||||| ||||||| ||||| || ||||| || |||| |||||| |||||||| || ||    
T  22740667 agaaggttctagaagcatgttcattgaagaaagacctcgaggttttaccatttggtgatcagaccattattggagagaagggaatcaatttgagtggtgg 22740766  T
Q  237 acagaaacaaagagtacaaattgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgc 314  Q
    |||||| |||||| ||||||| ||||||||| | || ||||||||||||||||||||  | |||||||| ||||||||    
T  22740767 acagaagcaaagactacaaatcgctcgtgctctttaccaagatgctgatatatatctgctcgatgatccctttagtgc 22740844  T

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Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 14372474 - 14372774
Alignment:
Q  14 agatatcaggtattttaaaagtgtgtggtacaaaggcttatgtagcacagtcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaa 113  Q
    |||||||||| ||  | ||||| ||||| |||||||| ||||| || || ||||||||||| |||||| ||| ||||||  |||| |||||||||||  |    
T  14372474 agatatcaggcatccttaaagtttgtggaacaaaggcctatgttgctcaatcaccatggattcaaagtggcacgatagaggataatatattgtttggtga 14372573  T
Q  114 ggatatggaaaggcaaagatatgagaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggag 213  Q
      | ||||  | | |||| ||||||| ||| |||||||||||||| || ||||||||||| || || || |||||||| ||||| ||| ||||||| |||    
T  14372574 acacatggttaaggaaaggtatgagatggtacttgaagcatgttccctgaagaaggatctggaaatattgtcatttggtgatcagacagttataggcgag 14372673  T
Q  214 aggggaataaatttgagcggcggacagaaacaaagagtacaaattgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtg 313  Q
     | |||||||||||||| || ||||||||||| ||| ||||||||||||| ||| | || |||||||||||||||||||||||||||||||| |||||||    
T  14372674 cgtggaataaatttgagtggtggacagaaacagagaatacaaattgctcgcgctctttaccaagatgctgatatatatctatttgatgatccttttagtg 14372773  T
Q  314 c 314  Q
    |    
T  14372774 c 14372774  T

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Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 37 - 322
Target Start/End: Complemental strand, 41451870 - 41451585
Alignment:
Q  37 tgtggtacaaaggcttatgtagcacagtcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaaggcaaagatatg 136  Q
    ||||| |||||||| ||||| || || ||||||||||| |||||| ||||||||||  |||| |||||||||||  |  | ||||  ||| |||| ||||    
T  41451870 tgtggaacaaaggcctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggtgaaaacatggttagggaaaggtatg 41451771  T
Q  137 agaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgagcggcgg 236  Q
    | ||||| ||||||||||||||  | ||||||||| | || || || |||||||| ||||| ||| ||||||| ||| | |||||||||||||| || ||    
T  41451770 aaaaggtacttgaagcatgttccttgaagaaggatttggaaatcttgtcatttggtgatcagacagttataggcgagcgtggaataaatttgagtggtgg 41451671  T
Q  237 acagaaacaaagagtacaaattgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatg 322  Q
    ||||||||||||| ||||||| ||||||||| | || |||||||||||||| ||||||||||| ||||| ||||||||| ||||||    
T  41451670 acagaaacaaagaatacaaatagctcgtgctctttaccaagatgctgatatctatctatttgacgatccttttagtgctgttgatg 41451585  T

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Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 64 - 315
Target Start/End: Complemental strand, 14240834 - 14240583
Alignment:
Q  64 tcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaaggcaaagatatgagaaggttcttgaagcatgttcactaa 163  Q
    ||||||||||| |||||| ||||||||||  |||| ||||||||||| ||  | ||||  ||| |||| ||||| ||||| || ||||| || |   |||    
T  14240834 tcaccatggattcaaagtggcaagatagaggataatatattgtttggcaaacaaatggttagggaaaggtatgaaaaggtactcgaagcttgctacttaa 14240735  T
Q  164 agaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgagcggcggacagaaacaaagagtacaaattgctcg 263  Q
    |||||||||| || || || |||||||| ||||||||  ||||||| ||| | |||||||||||||| || ||||||||||||||| |||||||||| ||    
T  14240734 agaaggatctggaaatcttgtcatttggtgatcaaacggttataggcgagcgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcg 14240635  T
Q  264 tgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgct 315  Q
     ||| | || |||||||||||||| ||||||||||||||||| |||||||||    
T  14240634 cgctctttaccaagatgctgatatctatctatttgatgatccttttagtgct 14240583  T

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Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 315
Target Start/End: Complemental strand, 41438693 - 41438423
Alignment:
Q  45 aaaggcttatgtagcacagtcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaaggcaaagatatgagaaggtt 144  Q
    |||||| ||||| || || | ||||||||| |||||| ||||||||||  |||| ||||| |||||  |  | ||||  ||| |||| ||||| |||||     
T  41438693 aaaggcctatgttgctcaattaccatggattcaaagtggcaagatagaggataatatattatttggtgaaaacatggttagggaaaggtatgaaaaggta 41438594  T
Q  145 cttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgagcggcggacagaaac 244  Q
    |||||||||||| |  | ||||||||| | || || || |||||||| ||||| ||| ||||||| ||| | |||||||||||||| || ||||||||||    
T  41438593 cttgaagcatgtaccttgaagaaggatttagaaatcttgtcatttggtgatcagacagttataggcgagcgtggaataaatttgagtggtggacagaaac 41438494  T
Q  245 aaagagtacaaattgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgct 315  Q
    ||||| ||||||| ||||||||| | || |||||||||||||| ||||||||||||||||| |||||||||    
T  41438493 aaagaatacaaatagctcgtgctctttaccaagatgctgatatctatctatttgatgatccttttagtgct 41438423  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 8019 - 7954
Alignment:
Q  257 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatg 322  Q
    ||||||||||| | |||||  ||||||||||||||||||| |||||||| ||||||||| ||||||    
T  8019 ttgctcgtgctctttatcagaatgctgatatatatctattagatgatccatttagtgctgttgatg 7954  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 11673033 - 11672968
Alignment:
Q  257 ttgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatg 322  Q
    ||||||||||| | |||||| |||||||| |||||||||| |||||||| ||||||||| ||||||    
T  11673033 ttgctcgtgctctctatcaaaatgctgatttatatctattggatgatccatttagtgctgttgatg 11672968  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 11663913 - 11663976
Alignment:
Q  259 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatg 322  Q
    ||||||||| | |||||  |||||||||||||||| || |||||||| ||||||||| ||||||    
T  11663913 gctcgtgctctttatcagaatgctgatatatatctcttggatgatccatttagtgctgttgatg 11663976  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 11709553 - 11709511
Alignment:
Q  280 gctgatatatatctatttgatgatccgtttagtgctcttgatg 322  Q
    |||||||||||||| || |||||||||||||||||| ||||||    
T  11709553 gctgatatatatctcttggatgatccgtttagtgctgttgatg 11709511  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 2301233 - 2301313
Alignment:
Q  235 ggacagaaacaaagagtacaaattgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgct 315  Q
    ||||||||||||||| |||| || ||| | ||| | |||||||||||||| ||||| || ||||||||||| |||||||||    
T  2301233 ggacagaaacaaagaatacagatagctagagctgtttatcaagatgctgacatatacctttttgatgatccttttagtgct 2301313  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 2325452 - 2325532
Alignment:
Q  235 ggacagaaacaaagagtacaaattgctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgct 315  Q
    ||||||||||||||| |||| || ||| | ||| | |||||||||||||| ||||| || ||||||||||| |||||||||    
T  2325452 ggacagaaacaaagaatacagatagctagagctgtttatcaagatgctgacatatacctttttgatgatccttttagtgct 2325532  T

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Target: scaffold0196 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 13483 - 13546
Alignment:
Q  259 gctcgtgctttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatg 322  Q
    ||||||||||| ||| |  ||||||||||||||||||| |||||||| ||||||||| ||||||    
T  13483 gctcgtgctttttatgagaatgctgatatatatctattggatgatccatttagtgctgttgatg 13546  T

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