View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_high_5 (Length: 598)

Name: NF2371_high_5
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_high_5
NF2371_high_5
[»] chr5 (18 HSPs)
chr5 (25-582)||(37385263-37385830)
chr5 (31-190)||(37232499-37232658)
chr5 (280-393)||(37217691-37217804)
chr5 (280-393)||(37223390-37223503)
chr5 (291-393)||(37232334-37232436)
chr5 (28-190)||(37217858-37218020)
chr5 (28-190)||(37223558-37223720)
chr5 (465-581)||(37217144-37217260)
chr5 (463-581)||(37232075-37232193)
chr5 (472-581)||(37223144-37223253)
chr5 (304-393)||(37198245-37198334)
chr5 (286-382)||(37203257-37203353)
chr5 (57-170)||(37203449-37203562)
chr5 (514-576)||(37197993-37198055)
chr5 (85-154)||(37315683-37315752)
chr5 (318-382)||(37315476-37315540)
chr5 (71-157)||(37239223-37239309)
chr5 (57-154)||(37198482-37198579)
[»] chr3 (2 HSPs)
chr3 (79-157)||(36199539-36199617)
chr3 (318-382)||(36199334-36199398)
[»] chr2 (1 HSPs)
chr2 (306-379)||(8733318-8733391)


Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 25 - 582
Target Start/End: Original strand, 37385263 - 37385830
Alignment:
Q  25 taatactataccttcacagtaaagttttcatttaataaaatattatctgatttgatgtcgcgatggatgtatacaggcactgaatgctcatgaatgtatt 124  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37385263 taatattataccttcccagtaaagttttcatttaataaaatattatctgatttgatgtcgcgatggatgtatacaggcactgaatgctcatgaatgtatt 37385362  T
Q  125 caaggcctcttgctacatccagagcaatttgcatcctggtagaccacgtcatcggtcctctctctgtagatagtttcacttgatccttttaggctagagt 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37385363 caaggcctcttgctacatccagagcaatttgcatcctggtagaccacgtcatcggtcctctctctgtaaatagtttcacttgatccttttaggctagagt 37385462  T
Q  225 cgttttattcacattaatgcaacaacactgaaaatagatactcttcatcatgtacttataattatgtcacctgaatcatgtagatgttggcttaagtttc 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37385463 cgttttattcacattaatgcaacaacactgaaaatagatactcttcatcatgtacttataattatgtcacctgaatcatgtagattttggcttaagtttc 37385562  T
Q  325 cattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaatcaagtgtacctatacatgttcaaacacacacacatattactc--- 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       
T  37385563 cattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaatcaagtgtacctatacatgttcaaacacacacacacattactcaaa 37385662  T
Q  422 -------atagcgcaaccaccaactttataaaacaaaacatgatttaagtttgaaaatttaccaggttgcagtggtgaactcttgttaagattttcagtt 514  Q
           | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37385663 taagtttacagcacaacaaccaactttataaaacaaaacatgatttaagtttgaaaatttaccaggttgcagtggtgaactcttgttaagattttcagtt 37385762  T
Q  515 cagcaagaaattcccttgttgcctgcatcttcatcttttttattgcagttttctgtgtaattgaagag 582  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37385763 cagcaagaaattcccttgttgcttgcatcttcatcttttttattgcagttttctgtgtaattgaagag 37385830  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 37232658 - 37232499
Alignment:
Q  31 tataccttcacagtaaagttttcatttaataaaatattatctgatttgatgtcgcgatggatgtatacaggcactgaatgctcatgaatgtattcaaggc 130  Q
    ||||||||| || | ||||||| |||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || |||||||    
T  37232658 tataccttcccattgaagtttttatttaataaaatattatctgattttatgtcacgatggatatatacaggcaccgaatgatcatgaatatactcaaggc 37232559  T
Q  131 ctcttgctacatccagagcaatttgcatcctggtagaccacgtcatcggtcctctctctg 190  Q
    |||||||||||||||||||||||| ||||||  ||||| | |||||| || || ||||||    
T  37232558 ctcttgctacatccagagcaattttcatccttctagacaaggtcatcagttctttctctg 37232499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 280 - 393
Target Start/End: Complemental strand, 37217804 - 37217691
Alignment:
Q  280 ttataattatgtcacctgaatcatgtagatgttggcttaagtttccattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaat 379  Q
    ||||||| || |||||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  37217804 ttataataatatcacctgaattatgtagatgttggcttaagtttccattttccatgtattcatacacaaggaatagaaatccctcgacacaatatccaat 37217705  T
Q  380 caagtgtacctata 393  Q
    ||||||||||||||    
T  37217704 caagtgtacctata 37217691  T

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Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 280 - 393
Target Start/End: Complemental strand, 37223503 - 37223390
Alignment:
Q  280 ttataattatgtcacctgaatcatgtagatgttggcttaagtttccattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaat 379  Q
    ||||||| || |||||||||| ||||||||||||| ||||||||||||| || ||||||||||| |||||||||||| ||||||||||||||||||||||    
T  37223503 ttataataatatcacctgaattatgtagatgttggtttaagtttccattttccatgtattcatacacaaggaatagaaatccctcaacacaatatccaat 37223404  T
Q  380 caagtgtacctata 393  Q
    ||||||||||||||    
T  37223403 caagtgtacctata 37223390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 291 - 393
Target Start/End: Complemental strand, 37232436 - 37232334
Alignment:
Q  291 tcacctgaatcatgtagatgttggcttaagtttccattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaatcaagtgtacct 390  Q
    |||||||||| ||||||||||||||||||||||||||| || ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||    
T  37232436 tcacctgaattatgtagatgttggcttaagtttccattttccatgtattcatacacaagaaatagaaatccctcaacacaatatccaatcaagtgtacct 37232337  T
Q  391 ata 393  Q
    |||    
T  37232336 ata 37232334  T

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Target: chr5; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 37218020 - 37217858
Alignment:
Q  28 tactataccttcacagtaaagttttcatttaataaaatattatctgatttgatgtcgcgatggatgtatacaggcactgaatgctcatgaatgtattcaa 127  Q
    |||||||||||  |||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || || ||||| |||||||| || || |    
T  37218020 tactataccttgccagtgaagttttcatttaacaaaatattatctgattttatgtcgcgatggatatatacgggaacggaatgatcatgaatatactcta 37217921  T
Q  128 ggcctcttgctacatccagagcaatttgcatcctggtagaccacgtcatcggtcctctctctg 190  Q
    | || || || |||||||| ||||||| |||||| |||||| ||||||||||| || ||||||    
T  37217920 gacccctcgcaacatccagggcaattttcatccttgtagacaacgtcatcggttctttctctg 37217858  T

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Target: chr5; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 37223720 - 37223558
Alignment:
Q  28 tactataccttcacagtaaagttttcatttaataaaatattatctgatttgatgtcgcgatggatgtatacaggcactgaatgctcatgaatgtattcaa 127  Q
    |||||| ||||  |||| |||||||||||||| | ||||||||||||||| ||||| |||||||| |||||||| |  ||||| |||||||| || ||||    
T  37223720 tactatgccttgccagtgaagttttcatttaacagaatattatctgattttatgtcacgatggatatatacaggaatggaatgatcatgaatatactcaa 37223621  T
Q  128 ggcctcttgctacatccagagcaatttgcatcctggtagaccacgtcatcggtcctctctctg 190  Q
    ||||||| || |||||||| ||||||| |||||| |||||| |||| |||||| || ||||||    
T  37223620 ggcctctcgcaacatccagggcaattttcatccttgtagacaacgttatcggttctttctctg 37223558  T

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Target: chr5; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 465 - 581
Target Start/End: Complemental strand, 37217260 - 37217144
Alignment:
Q  465 ttgaaaatttaccaggttgcagtggtgaactcttgttaagattttcagttcagcaagaaattcccttgttgcctgcatcttcatcttttttattgcagtt 564  Q
    |||||||||||||||||| ||||| ||||| |||||||| | |||||||||||  |||||||| |||||||| |||||||||||||| || |||||| ||    
T  37217260 ttgaaaatttaccaggttccagtgatgaacacttgttaaaactttcagttcagagagaaattctcttgttgcttgcatcttcatcttcttgattgcaatt 37217161  T
Q  565 ttctgtgtaattgaaga 581  Q
    |||||||||||| ||||    
T  37217160 ttctgtgtaattaaaga 37217144  T

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Target: chr5; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 463 - 581
Target Start/End: Complemental strand, 37232193 - 37232075
Alignment:
Q  463 gtttgaaaatttaccaggttgcagtggtgaactcttgttaagattttcagttcagcaagaaattcccttgttgcctgcatcttcatcttttttattgcag 562  Q
    ||||||||||||||||||||  ||||  |||| |||||||||| ||||||||||| ||||||||| |||||||| ||| |||||||||| || ||||||     
T  37232193 gtttgaaaatttaccaggtttaagtgacgaacacttgttaagactttcagttcagaaagaaattctcttgttgcttgcgtcttcatcttcttgattgcaa 37232094  T
Q  563 ttttctgtgtaattgaaga 581  Q
     ||||||||||||| ||||    
T  37232093 ctttctgtgtaattaaaga 37232075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 472 - 581
Target Start/End: Complemental strand, 37223253 - 37223144
Alignment:
Q  472 tttaccaggttgcagtggtgaactcttgttaagattttcagttcagcaagaaattcccttgttgcctgcatcttcatcttttttattgcagttttctgtg 571  Q
    ||||||||||| | ||| ||||| |||||||| | ||||||||||| ||||||||| |||||||| |||||||||||||| || |||||| |||||||||    
T  37223253 tttaccaggttccggtgatgaacacttgttaacactttcagttcagaaagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtg 37223154  T
Q  572 taattgaaga 581  Q
    ||||| ||||    
T  37223153 taattaaaga 37223144  T

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Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 37198334 - 37198245
Alignment:
Q  304 gtagatgttggcttaagtttccattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaatcaagtgtacctata 393  Q
    |||||||||||| |||||||||||| || ||||||||||| |||||||| || |||||||||||||| ||||| |||||| |||||||||    
T  37198334 gtagatgttggcctaagtttccattatcaatgtattcatagacaaggaaaagggatccctcaacacagtatccgatcaagcgtacctata 37198245  T

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Target: chr5; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 286 - 382
Target Start/End: Complemental strand, 37203353 - 37203257
Alignment:
Q  286 ttatgtcacctgaatcatgtagatgttggcttaagtttccattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaatcaa 382  Q
    |||| ||||||||||| || |||| ||| || |||||||||||||| ||||||||||| |||||||| ||| | || ||||||||||||||||||||    
T  37203353 ttatctcacctgaatcgtgaagattttgactcaagtttccattgtcaatgtattcatagacaaggaagagaaaaccttcaacacaatatccaatcaa 37203257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 37203562 - 37203449
Alignment:
Q  57 taataaaatattatctgatttgatgtcgcgatggatgtatacaggcactgaatgctcatgaatgtattcaaggcctcttgctacatccagagcaatttgc 156  Q
    ||||||||| || || || || || ||||||||||| |||||||| |||| ||| |||||||| |||||||| ||||| |||  |||||| |||||||||    
T  37203562 taataaaatgttctccgactttatatcgcgatggatatatacaggtactgtatgttcatgaatatattcaagacctctggctgaatccagcgcaatttgc 37203463  T
Q  157 atcctggtagacca 170  Q
    ||||| ||||||||    
T  37203462 atccttgtagacca 37203449  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 576
Target Start/End: Complemental strand, 37198055 - 37197993
Alignment:
Q  514 tcagcaagaaattcccttgttgcctgcatcttcatcttttttattgcagttttctgtgtaatt 576  Q
    ||||||||||||||  ||||||| | ||| | ||||||||||||||||| |||||||||||||    
T  37198055 tcagcaagaaattcttttgttgctttcatgtccatcttttttattgcagctttctgtgtaatt 37197993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 37315752 - 37315683
Alignment:
Q  85 cgatggatgtatacaggcactgaatgctcatgaatgtattcaaggcctcttgctacatccagagcaattt 154  Q
    |||||||| || | |||||| | ||| |||||||||||||||||||||||||||  ||| ||||||||||    
T  37315752 cgatggatatacataggcacagtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaattt 37315683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 37315540 - 37315476
Alignment:
Q  318 aagtttccattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaatcaa 382  Q
    ||||||||||| || |||| |||||| |||||||| || ||||| ||||| ||||||||||||||    
T  37315540 aagtttccattatcaatgtgttcatatacaaggaaaagtgatccttcaacgcaatatccaatcaa 37315476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 37239309 - 37239223
Alignment:
Q  71 ctgatttgatgtcgcgatggatgtatacaggcactgaatgctcatgaatgtattcaaggcctcttgctacatccagagcaatttgca 157  Q
    ||||||| | |||||||||||| || |||||||| |  || |||||||||||||| |||||||| |||  ||| |||||||| ||||    
T  37239309 ctgattttacgtcgcgatggatataaacaggcacagtgtgttcatgaatgtattctaggcctctggctgaatctagagcaatctgca 37239223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 37198579 - 37198482
Alignment:
Q  57 taataaaatattatctgatttgatgtcgcgatggatgtatacaggcactgaatgctcatgaatgtattcaaggcctcttgctacatccagagcaattt 154  Q
    ||||| |||||| ||||| || ||||||||||| || |||  ||| || | ||| || |||||||||||||| ||||| |||  ||||||||||||||    
T  37198579 taatagaatattttctgactttatgtcgcgatgaatatatgtagggacggtatgttcgtgaatgtattcaagacctctggctgaatccagagcaattt 37198482  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 36199617 - 36199539
Alignment:
Q  79 atgtcgcgatggatgtatacaggcactgaatgctcatgaatgtattcaaggcctcttgctacatccagagcaatttgca 157  Q
    ||||| ||||| || ||||||||||||| ||||||||| || |||||||| ||||| ||   ||||| |||||||||||    
T  36199617 atgtcacgatgaatatatacaggcactgtatgctcatggatatattcaagacctctggcagaatccaaagcaatttgca 36199539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 36199398 - 36199334
Alignment:
Q  318 aagtttccattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaatcaa 382  Q
    |||||||| || || ||||||||||| |||||||| ||||| || |||| || ||||||||||||    
T  36199398 aagtttccgttctcaatgtattcatagacaaggaaaagagagccttcaatactatatccaatcaa 36199334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 8733318 - 8733391
Alignment:
Q  306 agatgttggcttaagtttccattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaat 379  Q
    |||||||| ||||| || ||||| || ||||| |||||||| |  |||| ||| ||||||||||||||||||||    
T  8733318 agatgttgacttaaattgccattctcaatgtactcataaaccaaaaataaagagccctcaacacaatatccaat 8733391  T

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