View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_high_54 (Length: 279)

Name: NF2371_high_54
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_high_54
NF2371_high_54
[»] chr5 (3 HSPs)
chr5 (13-260)||(5399818-5400069)
chr5 (132-165)||(38749571-38749604)
chr5 (125-169)||(14818307-14818351)
[»] scaffold0004 (1 HSPs)
scaffold0004 (129-166)||(101015-101052)
[»] chr6 (3 HSPs)
chr6 (132-165)||(17168912-17168945)
chr6 (114-155)||(13815057-13815098)
chr6 (134-174)||(9617454-9617494)
[»] chr7 (2 HSPs)
chr7 (134-174)||(19930940-19930980)
chr7 (132-168)||(30606069-30606105)
[»] chr4 (3 HSPs)
chr4 (125-169)||(32915610-32915654)
chr4 (125-169)||(5555136-5555180)
chr4 (129-169)||(25390890-25390930)
[»] chr8 (2 HSPs)
chr8 (125-172)||(14692470-14692517)
chr8 (129-169)||(18964192-18964232)
[»] chr3 (2 HSPs)
chr3 (115-167)||(41319316-41319369)
chr3 (129-169)||(35222953-35222993)
[»] scaffold0123 (1 HSPs)
scaffold0123 (134-174)||(44524-44564)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 5399818 - 5400069
Alignment:
Q  13 gtgagatgaaacgttcctgaaaaaagagatacatagtaagctatatatataccatcaatcacagattcggatacggacacaagacacgacatatatatgt 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  5399818 gtgatatgaaacgttcctgaaaaaagagatacatagtaagctatatatataccatcaatcacaaactcggatacggacacaagacacgacatatatatgt 5399917  T
Q  113 ctgacatcaatgataatttaaaaaatgacataattcaatgtaactatatgtgtcggtatcg----tatatatgtatatgatactgagacacatataatcc 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||    ||||||| |||||||||||||||||||| |||||     
T  5399918 ctgacatcaataataatttaaaaaatgacataattcaatgtaattatatgtttcagtatcgtgtatatatatatatatgatactgagacacatctaatct 5400017  T
Q  209 gaagagtacgtgtgtttattaggtatatggacatgtctattaatgatcaatc 260  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5400018 gaagagtacgtgtgtttattaggtatatggacatgtcgattaatgatcaatc 5400069  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 38749604 - 38749571
Alignment:
Q  132 aaaaaatgacataattcaatgtaactatatgtgt 165  Q
    |||||||||||||||||||||||| |||||||||    
T  38749604 aaaaaatgacataattcaatgtaattatatgtgt 38749571  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 14818351 - 14818307
Alignment:
Q  125 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt 169  Q
    ||||||| | |||||||||||||||||||||  ||||||||||||    
T  14818351 ataatttgagaaatgacataattcaatgtaaacatatgtgtcggt 14818307  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 101015 - 101052
Alignment:
Q  129 tttaaaaaatgacataattcaatgtaactatatgtgtc 166  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  101015 tttaaaaaatgacataattcaatgtaattatatgtgtc 101052  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 17168912 - 17168945
Alignment:
Q  132 aaaaaatgacataattcaatgtaactatatgtgt 165  Q
    ||||||||||||||||||||||||||||||||||    
T  17168912 aaaaaatgacataattcaatgtaactatatgtgt 17168945  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 13815098 - 13815057
Alignment:
Q  114 tgacatcaatgataatttaaaaaatgacataattcaatgtaa 155  Q
    ||||| |||| ||||||||||||||||||||||| |||||||    
T  13815098 tgacaccaataataatttaaaaaatgacataattgaatgtaa 13815057  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 9617454 - 9617494
Alignment:
Q  134 aaaatgacataattcaatgtaactatatgtgtcggtatcgt 174  Q
    ||||| |||||||||||||||| ||||||||||||| ||||    
T  9617454 aaaatcacataattcaatgtaattatatgtgtcggtgtcgt 9617494  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 19930980 - 19930940
Alignment:
Q  134 aaaatgacataattcaatgtaactatatgtgtcggtatcgt 174  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  19930980 aaaatgacataattcaatgtaattatatgtgtcgatatcgt 19930940  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 30606105 - 30606069
Alignment:
Q  132 aaaaaatgacataattcaatgtaactatatgtgtcgg 168  Q
    ||||||||||||||||||||||||| |||||||||||    
T  30606105 aaaaaatgacataattcaatgtaaccatatgtgtcgg 30606069  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 32915654 - 32915610
Alignment:
Q  125 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt 169  Q
    |||||||||||||| |||||||||||||||| ||||||| |||||    
T  32915654 ataatttaaaaaatcacataattcaatgtaattatatgtttcggt 32915610  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 5555180 - 5555136
Alignment:
Q  125 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt 169  Q
    |||||||||||||| | |||||| ||||||| |||||||||||||    
T  5555180 ataatttaaaaaataagataatttaatgtaattatatgtgtcggt 5555136  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 25390930 - 25390890
Alignment:
Q  129 tttaaaaaatgacataattcaatgtaactatatgtgtcggt 169  Q
    |||| |||||||||||||||||| |||| ||||||||||||    
T  25390930 tttagaaaatgacataattcaatataaccatatgtgtcggt 25390890  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 14692470 - 14692517
Alignment:
Q  125 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggtatc 172  Q
    ||||||| | ||||||||||||||| |||||||||| |||||||||||    
T  14692470 ataatttgagaaatgacataattcagtgtaactataggtgtcggtatc 14692517  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 18964192 - 18964232
Alignment:
Q  129 tttaaaaaatgacataattcaatgtaactatatgtgtcggt 169  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  18964192 tttagaaaatcacataattcaatgtaattatatgtgtcggt 18964232  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 41319369 - 41319316
Alignment:
Q  115 gacatcaatgataattt-aaaaaatgacataattcaatgtaactatatgtgtcg 167  Q
    |||| |||| ||||||| |||||||||||||||||||||||| | |||||||||    
T  41319369 gacaccaataataatttgaaaaaatgacataattcaatgtaattgtatgtgtcg 41319316  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 35222953 - 35222993
Alignment:
Q  129 tttaaaaaatgacataattcaatgtaactatatgtgtcggt 169  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  35222953 tttagaaaatcacataattcaatgtaattatatgtgtcggt 35222993  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 44564 - 44524
Alignment:
Q  134 aaaatgacataattcaatgtaactatatgtgtcggtatcgt 174  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  44564 aaaatcacataattcagtgtaattatatgtgtcggtatcgt 44524  T

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