View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2371_high_55 (Length: 279)
Name: NF2371_high_55
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_55 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 38091672 - 38091916
Alignment:
| Q |
13 |
attatactctcaaactctactcattgtgtctgtcagtgttaaatttaagatctttatactaaataaaattccaactttaaataatgttataaaattaact |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
38091672 |
attatactctcaaactctactcattgtgtctgttagtgttaaattttagatctttatactaaataaaattctaactttaaaaaatgttataaaattaact |
38091771 |
T |
|
| Q |
113 |
catagttttgatttttcttcttgagctgagtactagctcaagatgtagctcaaaatttgacaagtgcaaaaaggtatgctgtacttgtgcatgcaattga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38091772 |
catagttttgatttttcttcttgagctgagtactagctcaagatctagctcaaaatttgacaagtgcaaaaaggtatgttgtacttgtgcatgcaattga |
38091871 |
T |
|
| Q |
213 |
acttggaggtatctcgcagtcatgcgcatgcacgtgatcaccatc |
257 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38091872 |
acttggaggtatcttgcagtcatgcgcatgcacgtgatcaccatc |
38091916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University