View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_high_61 (Length: 266)

Name: NF2371_high_61
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_high_61
NF2371_high_61
[»] chr6 (3 HSPs)
chr6 (112-266)||(16852126-16852282)
chr6 (43-108)||(16850787-16850852)
chr6 (201-265)||(34794537-34794602)
[»] chr3 (2 HSPs)
chr3 (112-266)||(19345153-19345308)
chr3 (201-265)||(48224151-48224216)
[»] chr5 (3 HSPs)
chr5 (112-266)||(31885984-31886139)
chr5 (147-241)||(24763293-24763387)
chr5 (226-265)||(21639038-21639078)
[»] scaffold0166 (1 HSPs)
scaffold0166 (147-241)||(5790-5884)
[»] chr2 (4 HSPs)
chr2 (125-207)||(11470573-11470654)
chr2 (226-265)||(38911347-38911386)
chr2 (226-265)||(17829070-17829110)
chr2 (226-265)||(32875757-32875797)
[»] chr4 (1 HSPs)
chr4 (201-265)||(50824623-50824688)
[»] chr8 (2 HSPs)
chr8 (200-265)||(29459273-29459339)
chr8 (201-262)||(43777013-43777075)
[»] chr7 (7 HSPs)
chr7 (201-265)||(31221470-31221535)
chr7 (226-265)||(29736151-29736191)
chr7 (190-246)||(38669979-38670035)
chr7 (226-265)||(14753891-14753931)
chr7 (226-265)||(28308017-28308057)
chr7 (226-265)||(32388162-32388202)
chr7 (226-265)||(46011134-46011174)
[»] chr1 (4 HSPs)
chr1 (199-247)||(1116426-1116474)
chr1 (226-265)||(36604746-36604786)
chr1 (226-265)||(41575193-41575233)
chr1 (226-265)||(45559122-45559162)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 112 - 266
Target Start/End: Original strand, 16852126 - 16852282
Alignment:
Q  112 ttcgagtaattgcgaaagcttgctata--gtttatctgattcataaaaaaggtttaacctagattataaaatgacatgaccatattttaatgagtaaact 209  Q
    |||||||||||||||| ||| ||||||  ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16852126 ttcgagtaattgcgaaggctcgctatatagttcatctgattcataaaaaaggtttaacctaggttataaaatgacatgaccatattttaatgagtaaact 16852225  T
Q  210 agactcctctatcttgaaagatgcttgaattacactccacttcctcttatgttaaat 266  Q
    | ||||||||| ||||||| |||||| |||||||||||||| |||||||||||||||    
T  16852226 acactcctctaccttgaaatatgcttaaattacactccactccctcttatgttaaat 16852282  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 16850787 - 16850852
Alignment:
Q  43 tgacatcaagaagatatgtactaagatgtttcccgtggattgcggcaaaaggagtgtcctcggcta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16850787 tgacatcaagaagatatgtactaagatgtttcccgtggattgcggccaaaggagtgtcctcggcta 16850852  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 34794602 - 34794537
Alignment:
Q  201 gagtaaactagactcctctatcttgaaagatgcttgaattacactccact-tcctcttatgttaaa 265  Q
    ||||||| || ||||||||  ||| |||||||||||||||||||||| ||  ||||||||||||||    
T  34794602 gagtaaattacactcctcttcctttaaagatgcttgaattacactcccctcccctcttatgttaaa 34794537  T

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Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 112 - 266
Target Start/End: Original strand, 19345153 - 19345308
Alignment:
Q  112 ttcgagtaattgcgaaagcttgctatagtttatctgattcataaaaaaggtttaacctagattataaaatgacatgaccatattttaatgagtaaactag 211  Q
    |||||||||  ||||| | | ||||||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||     
T  19345153 ttcgagtaaccgcgaaggttcgctatagttcatctgattcataaaaaaggtttaacctaggttataaaatgctatgaccatattttaatgagtaaactac 19345252  T
Q  212 actcctctatcttgaaagatgcttgaattacactccact-tcctcttatgttaaat 266  Q
    | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  19345253 attcctctaccttgaaagatgcttgaattacactccactctcctcttatgttaaat 19345308  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 48224216 - 48224151
Alignment:
Q  201 gagtaaactagactcctctatcttgaaagatgcttgaattacactccacttcc-tcttatgttaaa 265  Q
    ||||||| || ||||||||  ||| |||||||||||||||||||||| || || ||||||||||||    
T  48224216 gagtaaattacactcctctcccttcaaagatgcttgaattacactcccctcccatcttatgttaaa 48224151  T

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Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 112 - 266
Target Start/End: Original strand, 31885984 - 31886139
Alignment:
Q  112 ttcgagtaattgcgaaagcttgctatagtttatctgattcataaaaaaggtttaacctagattataaaatgacatgaccatattttaatgagtaaactag 211  Q
    |||||||||| | ||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  |||| |||||||     
T  31885984 ttcgagtaatcgtgaaggctcgctatagttcatctgattcataaaaaaggtttaacctaggttataaaatgatatgaccatatttagatgattaaactac 31886083  T
Q  212 actcctctatcttgaaagatgcttgaattacactccac-ttcctcttatgttaaat 266  Q
    |||| |||  ||| |||||||||||||||||||||| | |||||||||||||||||    
T  31886084 actcatctcccttaaaagatgcttgaattacactccgctttcctcttatgttaaat 31886139  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 24763293 - 24763387
Alignment:
Q  147 gattcataaaaaaggtttaacctagattataaaatgacatgaccatattttaatgagtaaactagactcctctatcttgaaagatgcttgaatta 241  Q
    ||||||||||||||||| ||||||  |||||||| || ||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||    
T  24763293 gattcataaaaaaggttaaacctatgttataaaacgatatgaccatattttaatgagtaaattacactactctttcttgaaagatgcttgaatta 24763387  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 21639038 - 21639078
Alignment:
Q  226 aaagatgcttgaattacactccact-tcctcttatgttaaa 265  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  21639038 aaagatgcttgaattacactccactcccctcttatgttaaa 21639078  T

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Target: scaffold0166 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 5790 - 5884
Alignment:
Q  147 gattcataaaaaaggtttaacctagattataaaatgacatgaccatattttaatgagtaaactagactcctctatcttgaaagatgcttgaatta 241  Q
    ||||||||||||||||| ||||||  |||||||| || ||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||    
T  5790 gattcataaaaaaggttaaacctatgttataaaacgatatgaccatattttaatgagtaaattacactactctttcttgaaagatgcttgaatta 5884  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 11470654 - 11470573
Alignment:
Q  125 gaaagcttgctatagtttatctgattcataaaaaaggtttaacctagattataaaatgacatgaccatattttaatgagtaaa 207  Q
    ||||||| |||||| || |||||||||||||||| |||| ||||||  ||||||||| |  ||||||||||||||||||||||    
T  11470654 gaaagctcgctatatttcatctgattcataaaaa-ggttgaacctatgttataaaataatctgaccatattttaatgagtaaa 11470573  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 38911386 - 38911347
Alignment:
Q  226 aaagatgcttgaattacactccacttcctcttatgttaaa 265  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  38911386 aaagatgtttgaattacactccccttcctcttatgttaaa 38911347  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 17829070 - 17829110
Alignment:
Q  226 aaagatgcttgaattacactccact-tcctcttatgttaaa 265  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  17829070 aaagatgcttgaattacactccactcccctcttatgttaaa 17829110  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 32875757 - 32875797
Alignment:
Q  226 aaagatgcttgaattacactccact-tcctcttatgttaaa 265  Q
    ||||||||||||||||||||||||| |||| ||||||||||    
T  32875757 aaagatgcttgaattacactccactctcctgttatgttaaa 32875797  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 50824623 - 50824688
Alignment:
Q  201 gagtaaactagactcctctatcttgaaagatgcttgaattacactccacttc-ctcttatgttaaa 265  Q
    ||||||| || |||||||| || | ||||||||||||||||||||||||||| |||||||||||||    
T  50824623 gagtaaattacactcctctttcctcaaagatgcttgaattacactccacttctctcttatgttaaa 50824688  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 29459339 - 29459273
Alignment:
Q  200 tgagtaaactagactcctctatcttgaaagatgcttgaattacactccact-tcctcttatgttaaa 265  Q
    |||||||| || ||||| ||||| | |||||||||||||||||||||| || |||||||||||||||    
T  29459339 tgagtaaattacactcccctatcctcaaagatgcttgaattacactcccctctcctcttatgttaaa 29459273  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 43777075 - 43777013
Alignment:
Q  201 gagtaaactagactcctctatcttgaaagatgcttgaattacactccactt-cctcttatgtt 262  Q
    ||||||| || ||||||||  | | |||||||||||||||||||||||||| |||||||||||    
T  43777075 gagtaaattatactcctcttccctcaaagatgcttgaattacactccacttccctcttatgtt 43777013  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 31221535 - 31221470
Alignment:
Q  201 gagtaaactagactcctctatcttgaaagatgcttgaattacactccacttcc-tcttatgttaaa 265  Q
    ||||||| || |||||||| |||| |||||||||||||||||||||| || || ||||||||||||    
T  31221535 gagtaaattacactcctctctcttcaaagatgcttgaattacactcccctcccttcttatgttaaa 31221470  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 29736151 - 29736191
Alignment:
Q  226 aaagatgcttgaattacactccactt-cctcttatgttaaa 265  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  29736151 aaagatgcttgaattacactccacttccctcttatgttaaa 29736191  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 38669979 - 38670035
Alignment:
Q  190 catattttaatgagtaaactagactcctctatcttgaaagatgcttgaattacactc 246  Q
    |||||||||||||||||| || ||||| || || | |||||||||||||||||||||    
T  38669979 catattttaatgagtaaattacactcccctctccttaaagatgcttgaattacactc 38670035  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 14753931 - 14753891
Alignment:
Q  226 aaagatgcttgaattacactccact-tcctcttatgttaaa 265  Q
    |||||| |||||||||||||||||| |||||||||||||||    
T  14753931 aaagatacttgaattacactccactctcctcttatgttaaa 14753891  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 28308017 - 28308057
Alignment:
Q  226 aaagatgcttgaattacactccact-tcctcttatgttaaa 265  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  28308017 aaagatgcttgaattacactcccctctcctcttatgttaaa 28308057  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 32388202 - 32388162
Alignment:
Q  226 aaagatgcttgaattacactccact-tcctcttatgttaaa 265  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  32388202 aaagatgcttgaattacactccactcccctcttatgttaaa 32388162  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 46011174 - 46011134
Alignment:
Q  226 aaagatgcttgaattacactccacttc-ctcttatgttaaa 265  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  46011174 aaagatgcttgaattacactccccttctctcttatgttaaa 46011134  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 1116426 - 1116474
Alignment:
Q  199 atgagtaaactagactcctctatcttgaaagatgcttgaattacactcc 247  Q
    ||||||||| || ||||||||  ||| ||||||||||||||||||||||    
T  1116426 atgagtaaattacactcctctcccttcaaagatgcttgaattacactcc 1116474  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 36604746 - 36604786
Alignment:
Q  226 aaagatgcttgaattacactccactt-cctcttatgttaaa 265  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  36604746 aaagatgcttgaattacactcctcttccctcttatgttaaa 36604786  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 41575193 - 41575233
Alignment:
Q  226 aaagatgcttgaattacactccactt-cctcttatgttaaa 265  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  41575193 aaagatgcttgaattacactcctcttccctcttatgttaaa 41575233  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 45559122 - 45559162
Alignment:
Q  226 aaagatgcttgaattacactccacttcc-tcttatgttaaa 265  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  45559122 aaagatgcttgaattacactccccttccatcttatgttaaa 45559162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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