View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_high_67 (Length: 257)
Name: NF2371_high_67
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_67 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 31658967 - 31658753
Alignment:
| Q |
24 |
cttgcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacattccaattaa |
123 |
Q |
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| T |
31658967 |
cttgcaaaagttatttgcattcagatataaatttggaatccattttgtcatcaaatgactcttctatattacttagttttgataacaacattccaattaa |
31658868 |
T |
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| Q |
124 |
agaagaaaactcgtttccaccatcaccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaa |
223 |
Q |
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| T |
31658867 |
agaagaaaactcgtttccaccatcaccattgccatttcttgcatctacaaaagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaa |
31658768 |
T |
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| Q |
224 |
ttgttctcatcagat |
238 |
Q |
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| T |
31658767 |
ttgttctcatcagat |
31658753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 31650298 - 31650457
Alignment:
| Q |
79 |
tgactcttctatattactcagttttgataa---caacattccaattaaagaagaaaactcgtttccaccatcacc---attgccatttcttgcatctaca |
172 |
Q |
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| T |
31650298 |
tgactcttcaatattacttagtttcgataataacaacatttcaaataaacaagaatatccatttcgaccatcaccaccattgccacttcttgcatctaca |
31650397 |
T |
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| Q |
173 |
atagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctca |
232 |
Q |
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| T |
31650398 |
aaaggagatcccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctca |
31650457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 31657251 - 31657342
Alignment:
| Q |
24 |
cttgcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacatt |
115 |
Q |
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| T |
31657251 |
cttgcaaaagctcttaccattcagacataaaattggaatccattttgtgctacgatgactcttctatattacttagtttcgataacaacatt |
31657342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 31657390 - 31657434
Alignment:
| Q |
151 |
attgccatttcttgcatctacaatagaggatcctaaggaagagat |
195 |
Q |
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| T |
31657390 |
attgccacttcttgcatctacaaaagaggaacccaaggaagagat |
31657434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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