View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_high_70 (Length: 250)
Name: NF2371_high_70
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 43096758 - 43096517
Alignment:
| Q |
1 |
ttgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcagcaaccattcctcgcttacacatttcacatatga |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
43096758 |
ttgaaggtcacaatcgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcaacaaccattcctcacttacacatttcacatatga |
43096659 |
T |
|
| Q |
101 |
gaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgtgctcgattcaaaagacttacatcacataaaccttgaattacaacatt |
200 |
Q |
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||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43096658 |
gaattgtgtgcgtgcaaacattgcgctcggaaatttcaagatgaagagactgtgctcgattcaaaagacctacatcacataaaccttgaattacaacatt |
43096559 |
T |
|
| Q |
201 |
gtagcaataagcatcaggagttaaacctatttgattcatctc |
242 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43096558 |
gtagcaataagcatcatgagttaaacctatttgattcatctc |
43096517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 17487800 - 17488041
Alignment:
| Q |
1 |
ttgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcagcaaccattcctcgcttacacatttcacatatga |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17487800 |
ttgaaggtcacaaccgaaggttcacatccaagcttctccatttgattaaataattcttgtgcctcagcaaccattcctcgcttacacatttcacatatga |
17487899 |
T |
|
| Q |
101 |
gaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgtgctcgattcaaaagacttacatcacataaaccttgaattacaacatt |
200 |
Q |
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||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
17487900 |
gaattgtgtgcgtgcaaacattgtgctcggaaatttcaagacgaagagactgtgctcgattcaaaagacctacatcacataaaccttgaattacagcatt |
17487999 |
T |
|
| Q |
201 |
gtagcaataagcatcaggagttaaacctatttgattcatctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
17488000 |
gtagcaataagcatcaggagttaaacctatctgagtcatctc |
17488041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6779278 - 6779037
Alignment:
| Q |
1 |
ttgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcagcaaccattcctcgcttacacatttcacatatga |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6779278 |
ttgaaggtcacaaccgaaggttcacatccaagcttctccatttgattaaataattcttgtgcctcagcaaccattcctcgcttacacatttcacatatga |
6779179 |
T |
|
| Q |
101 |
gaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgtgctcgattcaaaagacttacatcacataaaccttgaattacaacatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
6779178 |
gaattgtgtgcgtgcaaacattgtgctcggaaatttcaagactaagagactgtgctcgattcaaaagatctacatcacataaaccttgaattacagcatt |
6779079 |
T |
|
| Q |
201 |
gtagcaataagcatcaggagttaaacctatttgattcatctc |
242 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||| ||||||| |
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|
| T |
6779078 |
gtagcaataagaatcaggagttaaacctatctgagtcatctc |
6779037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 22423850 - 22423608
Alignment:
| Q |
1 |
ttgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcagcaaccattcctcgcttacacatttcacatatga |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22423850 |
ttgaaggtcacaaccgaaggttcacatccaagcttctccatttgattaaataattcttgtgcctcagcaaccattcctcgcttacacatttcacatatga |
22423751 |
T |
|
| Q |
101 |
gaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgtgctcgattcaaaagacttacatcacataaaccttgaattacaacatt |
200 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
22423750 |
gaattgtgtgcgtgcaaacattgtgctcagaaatttcaagaagaagagaatgtgctcgattcaaaagacctacatcacataaaccttgaattacagcatt |
22423651 |
T |
|
| Q |
201 |
gtagcaataagcatcaggagttaaacctatttgattcatctca |
243 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
22423650 |
gtagcaataagcatcaggagttaaacctatctgagtcatctca |
22423608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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