View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_high_8 (Length: 526)
Name: NF2371_high_8
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 45083301 - 45083783
Alignment:
| Q |
1 |
agagcgcgaacgaacgaacgaaccaaccaaccattgcagataagcacatccaagtcaagtccccaccaacacgtgtcatccacacgattttcctttctgg |
100 |
Q |
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| T |
45083301 |
agagcgcgaacgaacgaacgaaccaaccaaccattgcagataagcacatccaagtcaagtccccaccaacacgtgtcatccacacgattttcctttctgg |
45083400 |
T |
|
| Q |
101 |
atttacaacatcgttcattcattcattgtacataacaaacaaacaacaatcttcagctcaatcgacacactttgtgaaaaggagaaaagttccaaattca |
200 |
Q |
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| T |
45083401 |
atttacaacatcgttcattcattcattgtacataacaaacaaacaacaatcttcagctcaatcgacacactttgtgaaaaggagaaaagttccaaattca |
45083500 |
T |
|
| Q |
201 |
aagcacaagacaagatggcttcaactacaacttctctatgttcctctaccctccaatctcagatcaatggactttcccttcacaagaattctctcttcca |
300 |
Q |
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| T |
45083501 |
aagcacaagacaagatggcttcaactacaacttctctatgttcctctaccctccaatctcagatcaatggactttcccttcacaagaattctctcttcca |
45083600 |
T |
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| Q |
301 |
tccccgttctctcactttctccaggtatacttttcttttcaattattgttagaattcaacttctggggtgttcagttatgtgtaatagtgtctttgaatc |
400 |
Q |
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| T |
45083601 |
tccccgttctctcactttctccaggtatacttttcttttcaattattgttagaattcaacttctggggtgttcagttatgtgtaatagtgtgtttgaa-- |
45083698 |
T |
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| Q |
401 |
tctatgttttgattggcaatctcgcgtcaatgctaatatgacggttaatttaaaacctacaaagtggagagtttgatggaagtga |
485 |
Q |
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| T |
45083699 |
tctatgttttgattggcaatctcgcgtcaatgctaatatgacggttaatttaaaacctacaaagtggagagtttgatggaagtga |
45083783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 515
Target Start/End: Original strand, 45083791 - 45083826
Alignment:
| Q |
480 |
aagtgactttcaattgatcgttgctaatgttgatga |
515 |
Q |
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| T |
45083791 |
aagtgactttcaattgatcgttgctaatgttcatga |
45083826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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