View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_high_9 (Length: 512)
Name: NF2371_high_9
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 181 - 497
Target Start/End: Complemental strand, 51937380 - 51937057
Alignment:
| Q |
181 |
acgaatccaggggtttaccgaatattgaaatggacgagcataccttcttaatcaacagagaaagagcagttgattacttgaactcccttgaaaaggtaag |
280 |
Q |
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| T |
51937380 |
acgaatccaggggttcaccgaatattgaaatggacgagcatactttcttagtcaacagagaaagagcagttgattacttgaactcccttgaaaaggtaag |
51937281 |
T |
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| Q |
281 |
aaattatacattattttcaagtaagggaacgggatccatgcctt-aatcttgggatcnnnnnnnctttcttaaatgtacttatcttataatgctgatcac |
379 |
Q |
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| T |
51937280 |
aaattatacattattttcaagtaagggaacgggatccatgccttaaatcttgggatctttttttctttcttaaatgtacttatcttataacgctgatcac |
51937181 |
T |
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| Q |
380 |
gggaacatgatggatgattctatgcgtgagtaagatcttcttcttctccaacaataataataaagtggactttatggatcaacgtgtccttgggt----- |
474 |
Q |
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| T |
51937180 |
gggaacatgatggatgattctatgcgtgattaagatcttcttcttctccaacaataataataaagtggactttatggatcaacgtgtcctttggtaatca |
51937081 |
T |
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| Q |
475 |
-atagcttgagataagaaggaagt |
497 |
Q |
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| T |
51937080 |
gatagcttgagataagaagaaagt |
51937057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 51937548 - 51937451
Alignment:
| Q |
6 |
aggagcagagacaggacgttctccacgtgacaaacgggttgttaaggatcagacaacccaacatgatctttggtggggaaagtgagtgtcctaaaaaa |
103 |
Q |
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| T |
51937548 |
aggagcaaagacaggacgttctccacgtgacaaacgggttgttaaggatcagacaacccaacatgatctttggtggggaaagtgagtgtcctaaaaaa |
51937451 |
T |
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