View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_high_90 (Length: 233)

Name: NF2371_high_90
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_high_90
NF2371_high_90
[»] chr1 (4 HSPs)
chr1 (9-221)||(9854465-9854677)
chr1 (135-203)||(26654188-26654253)
chr1 (76-172)||(30782876-30782974)
chr1 (89-165)||(25132653-25132729)
[»] chr6 (7 HSPs)
chr6 (72-221)||(15370633-15370781)
chr6 (72-216)||(8036958-8037101)
chr6 (72-221)||(15319992-15320140)
chr6 (77-221)||(15387070-15387213)
chr6 (72-221)||(15376857-15377005)
chr6 (72-221)||(15350161-15350309)
chr6 (88-150)||(13722698-13722760)
[»] chr4 (3 HSPs)
chr4 (72-221)||(7023030-7023175)
chr4 (75-187)||(7144345-7144456)
chr4 (76-150)||(27303931-27304006)
[»] chr2 (3 HSPs)
chr2 (86-221)||(19593182-19593316)
chr2 (56-160)||(21841991-21842096)
chr2 (87-150)||(30477721-30477785)
[»] chr8 (1 HSPs)
chr8 (82-176)||(18790013-18790106)
[»] chr7 (6 HSPs)
chr7 (82-176)||(10925026-10925119)
chr7 (142-203)||(20461176-20461236)
chr7 (82-161)||(14074451-14074530)
chr7 (82-161)||(14384479-14384558)
chr7 (82-150)||(7152097-7152166)
chr7 (76-124)||(7494496-7494544)
[»] chr5 (3 HSPs)
chr5 (120-187)||(20695907-20695974)
chr5 (105-171)||(24518188-24518254)
chr5 (72-190)||(31267127-31267248)
[»] chr3 (3 HSPs)
chr3 (120-186)||(11476013-11476079)
chr3 (144-192)||(8401290-8401338)
chr3 (82-150)||(25918103-25918171)
[»] scaffold0009 (1 HSPs)
scaffold0009 (6-54)||(107573-107621)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 9854677 - 9854465
Alignment:
Q  9 tcatgtcacggctttgtggacccctttcgtgaggagccctttgaaaatgatggacgaaagaaaaaatattggtaagtacaccaaatcgtaataattaata 108  Q
    |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||||| |||||||||||||||||||||| |||||    
T  9854677 tcatgtcacgactttgtggacccctttcgtgaggacccctttggaaatgatggactaaaggaaaaatattgataagtacaccaaatcgtaataagtaata 9854578  T
Q  109 aattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatttgaaagtaaataaaagtaaaagagattaaaagggttg 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  9854577 aattattaattttatcgtctttagagggattgccgttcaactcaataattaatggaacttatttgaaagtaaataaaagtaaaagagattaaaagggttg 9854478  T
Q  209 gagggttatattg 221  Q
     || |||||||||    
T  9854477 cagagttatattg 9854465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 26654188 - 26654253
Alignment:
Q  135 ggattgccgttcaactcgataattagcggaacttatttgaaagtaaataaaagtaaaagagattaaaag 203  Q
    |||||| | ||| ||||||||||||| | || |||||||||||||||||||||   |||||||||||||    
T  26654188 ggattgtcattctactcgataattagagaaatttatttgaaagtaaataaaag---aagagattaaaag 26654253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 172
Target Start/End: Complemental strand, 30782974 - 30782876
Alignment:
Q  76 attggtaagtacaccaaatcgtaataattaataaattattaagtt-tatcg-tctttagagggattgccgttcaactcgataattagcggaacttattt 172  Q
    ||||||||||||||||||||| ||||| ||||||| || |||||| ||||| |||  | || |||||||||||||||  ||||||| |  |||||||||    
T  30782974 attggtaagtacaccaaatcgcaataaataataaagtagtaagttgtatcgttctacacagagattgccgttcaacttaataattaacaaaacttattt 30782876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 25132653 - 25132729
Alignment:
Q  89 ccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaa 165  Q
    |||||||||| ||| |||||||||| |||||| ||| |||  | | |||||| |||||||||||| || ||||||||    
T  25132653 ccaaatcgtactaaataataaattaataagttaatcatctccacatggattgtcgttcaactcgacaactagcggaa 25132729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 15370781 - 15370633
Alignment:
Q  72 aaatattggtaagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatt 171  Q
    ||||||||| |||| ||||||||||||||||  |||||| || |||||||||| |||| | | |||||| ||||||| | | |||||| | || ||||||    
T  15370781 aaatattggaaagtgcaccaaatcgtaataagcaataaagtagtaagtttatcttcttcacaaggattgtcgttcaaattggtaattaacagatcttatt 15370682  T
Q  172 tgaaagtaaataaaagtaaaagagattaaaagggttggagggttatattg 221  Q
    ||||||||||||||||| ||||||||||||||||||  | ||||||||||    
T  15370681 tgaaagtaaataaaagt-aaagagattaaaagggttacaaggttatattg 15370633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 72 - 216
Target Start/End: Complemental strand, 8037101 - 8036958
Alignment:
Q  72 aaatattggtaagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatt 171  Q
    ||||||||| |||| ||| ||||||||| || ||||||| || |||||||| |||||  | |  ||||| | ||||||||| |||||||   ||||||||    
T  8037101 aaatattggcaagtgcactaaatcgtaacaagtaataaagtagtaagtttaccgtctccacatagattgtcattcaactcggtaattagtcaaacttatt 8037002  T
Q  172 tgaaagtaaataaaagtaaaagagattaaaagggttggagggtta 216  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||    
T  8037001 tgaaagtaaataaaagt-aaatagattaaaagggttgcagggtta 8036958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 15320140 - 15319992
Alignment:
Q  72 aaatattggtaagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatt 171  Q
    ||||||||| |||| ||||||||||||| ||  |||||| || |||||||||| |||| | | |||||| ||||||| | | |||||| | || ||||||    
T  15320140 aaatattggaaagtgcaccaaatcgtaacaagcaataaagtagtaagtttatcttcttcacaaggattgtcgttcaaattggtaattaacagatcttatt 15320041  T
Q  172 tgaaagtaaataaaagtaaaagagattaaaagggttggagggttatattg 221  Q
    | |||||||||||| || ||||||||||||||||||  | ||||||||||    
T  15320040 tcaaagtaaataaatgt-aaagagattaaaagggttacaaggttatattg 15319992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 15387213 - 15387070
Alignment:
Q  77 ttggtaagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatttgaaa 176  Q
    |||| |||| ||||||||||||| ||  |||||| || |||||||||| |||| | | |||||| ||||||| | | |||||| |||| |||| ||||||    
T  15387213 ttggcaagtgcaccaaatcgtaacaagcaataaagtagtaagtttatcttcttcacaaggattgtcgttcaaattggtaattaacggatcttagttgaaa 15387114  T
Q  177 gtaaataaaagtaaaagagattaaaagggttggagggttatattg 221  Q
    |||||||||||| |||||||||| || ||||  | ||||||||||    
T  15387113 gtaaataaaagt-aaagagattagaatggttacaaggttatattg 15387070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 15377005 - 15376857
Alignment:
Q  72 aaatattggtaagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatt 171  Q
    ||||||||| |||| ||| | ||||||| ||  |||||| || |||||||||| |||| | | |||||| ||||||| | | |||||| | || ||| ||    
T  15377005 aaatattggcaagtgcactagatcgtaacaaggaataaagtaataagtttatcttcttcacaaggattgtcgttcaaattggtaattaacagatcttttt 15376906  T
Q  172 tgaaagtaaataaaagtaaaagagattaaaagggttggagggttatattg 221  Q
    ||||||||||||||||| ||| ||||||||||||||  | ||||||||||    
T  15376905 tgaaagtaaataaaagt-aaatagattaaaagggttacaaggttatattg 15376857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 15350309 - 15350161
Alignment:
Q  72 aaatattggtaagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatt 171  Q
    ||||||||  |||| |||||||| |||| ||  |||||| || |||||||||| |||| | | |||||| |||| || | | |||||| | || ||||||    
T  15350309 aaatattgaaaagtgcaccaaattgtaacaagcaataaaatagtaagtttatcttcttcacaaggattgtcgttgaaattggtaattaacagatcttatt 15350210  T
Q  172 tgaaagtaaataaaagtaaaagagattaaaagggttggagggttatattg 221  Q
    | |||||||||||| || ||||||||||||||||||  | ||||||||||    
T  15350209 tcaaagtaaataaatgt-aaagagattaaaagggttacaaggttatattg 15350161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 13722698 - 13722760
Alignment:
Q  88 accaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaact 150  Q
    |||||||||||| ||| |||||| || |||||||||||| | || |||||||| |||||||||    
T  13722698 accaaatcgtaacaatcaataaagtagtaagtttatcgtatctatagggattgtcgttcaact 13722760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 7023030 - 7023175
Alignment:
Q  72 aaatattggtaagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatt 171  Q
    |||||||| ||||| ||||||||||||| || ||||||| || ||||||||| ||||  | | | |||| | ||||||    ||||||| ||| ||||||    
T  7023030 aaatattgataagtgcaccaaatcgtaacaaataataaagtagtaagtttattgtctccacaagtattgtcattcaacg---taattagtggatcttatt 7023126  T
Q  172 tgaaagtaaataaaagtaaaagagattaaaagggttggagggttatattg 221  Q
    ||||| ||||||||| |||||||||||||||  |||| ||||||||||||    
T  7023127 tgaaaataaataaaa-taaaagagattaaaaatgttgcagggttatattg 7023175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 7144456 - 7144345
Alignment:
Q  75 tattggtaagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatttga 174  Q
    |||||| ||||  ||||||||||||||| ||||||| || |||||| ||| |||| | | |||||| ||||||||||| |||||| | ||  ||||||||    
T  7144456 tattggcaagtgtaccaaatcgtaataaataataaagtagtaagtt-atcttcttcacatggattgtcgttcaactcggtaattatcagattttatttga 7144358  T
Q  175 aagtaaataaaag 187  Q
    |||||||||||||    
T  7144357 aagtaaataaaag 7144345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 27304006 - 27303931
Alignment:
Q  76 attggtaagtacaccaaatcgtaataattaataaattattaagtttatcgtcttt-agagggattgccgttcaact 150  Q
    ||||||||||  ||||||||||||||| ||||||| || |||||||||||| ||| | | |||||| |||||||||    
T  27304006 attggtaagtgtaccaaatcgtaataagtaataaagtagtaagtttatcgtttttcacaaggattgtcgttcaact 27303931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 19593316 - 19593182
Alignment:
Q  86 acaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatttgaaagtaaataaa 185  Q
    |||||||||||||| || ||||||| |  |||||||||||||| |   | | ||| ||||||||||| |||||| |||||| ||  ||||||||||||||    
T  19593316 acaccaaatcgtaacaagtaataaagttgtaagtttatcgtctctccggaggttgtcgttcaactcggtaattaccggaacataagtgaaagtaaataaa 19593217  T
Q  186 agtaaaagagattaaaagggttggagggttatattg 221  Q
    ||| ||||| || |||| ||||| ||||||||||||    
T  19593216 agt-aaagatatgaaaaaggttgcagggttatattg 19593182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 21841991 - 21842096
Alignment:
Q  56 tgatggacgaaagaaa-aaatattggtaagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgat 154  Q
    ||||||||||||||   ||||||||| |||| ||| ||||| |||||  ||||||| || |||||||||  ||| ||||||||||  | |||||||||||    
T  21841991 tgatggacgaaagatgtaaatattggcaagtgcactaaatcataataggtaataaagtagtaagtttattttctctagagggattatcattcaactcgat 21842090  T
Q  155 aattag 160  Q
    ||||||    
T  21842091 aattag 21842096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 30477721 - 30477785
Alignment:
Q  87 caccaaatcgtaataattaataaattattaagtttatcg-tctttagagggattgccgttcaact 150  Q
    |||||||||||||||| ||||||| || ||||||||||| |||| | | |||||| |||||||||    
T  30477721 caccaaatcgtaataaataataaagtagtaagtttatcgttcttcataaggattgtcgttcaact 30477785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 18790106 - 18790013
Alignment:
Q  82 aagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatttgaaa 176  Q
    |||| ||||||||||||  || ||||||| || |||||| |||||||| | |||||||  |||||||||||||||| ||| ||||||||||||||    
T  18790106 aagtgcaccaaatcgtatcaagtaataaagtagtaagtt-atcgtcttcatagggattttcgttcaactcgataatgagcagaacttatttgaaa 18790013  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 10925119 - 10925026
Alignment:
Q  82 aagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatttgaaa 176  Q
    |||| ||||||||||||  || ||||||| || |||||| |||||||| | |||||||  |||||||||||||||| ||| ||||||||||||||    
T  10925119 aagtgcaccaaatcgtatcaagtaataaagtagtaagtt-atcgtcttcatagggattttcgttcaactcgataatgagcagaacttatttgaaa 10925026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 20461176 - 20461236
Alignment:
Q  142 cgttcaactcgataattagcggaacttatttgaaagtaaataaaagtaaaagagattaaaag 203  Q
    ||||| ||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  20461176 cgttccactcggtagttagcagaacttatttgaaagtaaataaaagt-aaagagattaaaag 20461236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 14074530 - 14074451
Alignment:
Q  82 aagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagc 161  Q
    |||| ||| ||||||||| || ||||||| || ||||||||||||||| | | |||||| | ||||||||| ||||||||    
T  14074530 aagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcgtcttcacatggattgtcattcaactcggtaattagc 14074451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 14384558 - 14384479
Alignment:
Q  82 aagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagc 161  Q
    |||| ||| ||||||||| || ||||||| || ||||||||||||||| | | |||||| | ||||||||| ||||||||    
T  14384558 aagtgcacaaaatcgtaacaagtaataaagtagtaagtttatcgtcttcacatggattgtcattcaactcggtaattagc 14384479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 7152166 - 7152097
Alignment:
Q  82 aagtacaccaaatcgtaataattaataaattattaagtttatcgtcttt-agagggattgccgttcaact 150  Q
    |||| ||||||||||||| || ||||||| || |||||||||||| ||| |||||||||| | |||||||    
T  7152166 aagtgcaccaaatcgtaacaagtaataaagtagtaagtttatcgtttttcagagggattgtcattcaact 7152097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 7494544 - 7494496
Alignment:
Q  76 attggtaagtacaccaaatcgtaataattaataaattattaagtttatc 124  Q
    ||||| |||| ||||||||||||| || |||||||||| ||||||||||    
T  7494544 attggcaagtgcaccaaatcgtaacaagtaataaattagtaagtttatc 7494496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 20695974 - 20695907
Alignment:
Q  120 ttatcgtctttagagggattgccgttcaactcgataattagcggaacttatttgaaagtaaataaaag 187  Q
    |||||||||  | |||||||| ||||||||||| ||||||  |||| |||||||||||||||||||||    
T  20695974 ttatcgtctccacagggattgtcgttcaactcggtaattataggaatttatttgaaagtaaataaaag 20695907  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 24518254 - 24518188
Alignment:
Q  105 aataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagcggaacttatt 171  Q
    |||||| || ||||||||||||||  | |||||||| ||||||||||||||||||||  ||||||||    
T  24518254 aataaagtagtaagtttatcgtctccatagggattgtcgttcaactcgataattagcaaaacttatt 24518188  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 31267127 - 31267248
Alignment:
Q  72 aaatattggtaagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaactcgataattagc--ggaactt- 168  Q
    ||||||||| |||| || |||||||||| || ||  |||||| | |||||||||| |  | | ||||| || ||||| ||||||||||||  |||||||     
T  31267127 aaatattggcaagttcagcaaatcgtaacaagtatgaaattagttagtttatcgtttccacaaggattacccttcaaatcgataattagcacggaacttt 31267226  T
Q  169 atttgaaagtaaataaaagtaa 190  Q
    ||||||||||||||||||||||    
T  31267227 atttgaaagtaaataaaagtaa 31267248  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 11476079 - 11476013
Alignment:
Q  120 ttatcgtctttagagggattgccgttcaactcgataattagcggaacttatttgaaagtaaataaaa 186  Q
    |||| ||||||| | |||||| ||||||||||| ||||||| |||| ||||| ||||||||||||||    
T  11476079 ttattgtctttataaggattgtcgttcaactcggtaattagaggaatttattagaaagtaaataaaa 11476013  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 8401290 - 8401338
Alignment:
Q  144 ttcaactcgataattagcggaacttatttgaaagtaaataaaagtaaaa 192  Q
    |||||||| ||||||| |||||||||||||||||  |||||||||||||    
T  8401290 ttcaactctataattaacggaacttatttgaaagagaataaaagtaaaa 8401338  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 25918103 - 25918171
Alignment:
Q  82 aagtacaccaaatcgtaataattaataaattattaagtttatcgtctttagagggattgccgttcaact 150  Q
    |||| |||||||| |||| || ||||||  || ||||||||||||||| | |||||||| |||||||||    
T  25918103 aagtgcaccaaattgtaacaagtaataacgtagtaagtttatcgtcttcatagggattgtcgttcaact 25918171  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 107573 - 107621
Alignment:
Q  6 ctctcatgtcacggctttgtggacccctttcgtgaggagccctttgaaa 54  Q
    |||||||| |||||| | | |||| ||||||||||||||||||||||||    
T  107573 ctctcatgccacggcctcgaggactcctttcgtgaggagccctttgaaa 107621  T

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