View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2371_low_1 (Length: 861)
Name: NF2371_low_1
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_1 |
 | |
|
| [»] scaffold0128 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 746; Significance: 0; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 19 - 853
Target Start/End: Complemental strand, 572833 - 571997
Alignment:
| Q |
19 |
atggacaacttttagtgattcatattgcttcccaagaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttggg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
572833 |
atggacaacttttagtgattcatattgcttcccaggaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttggg |
572734 |
T |
|
| Q |
119 |
tgacattgcattattttataattctggggaacacttctatgcattgagcaacccaagaaggtggggttttgaaagcaactctttgtatgccatcaatctt |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
572733 |
tgacattgcattattttataattccggggaacacttctatgcattgagcaacccaaaaaggtgggattttgaaagcaactctttgtatgccatcaatctt |
572634 |
T |
|
| Q |
219 |
tcatccacaacatgtatagtgtgtttaggggatgataacgaactgccaaaatacattaagcatgatagatttcgagttcctccgaaggaaaatgcctact |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
572633 |
tcatccacaacatgtaaagtgtgtttaggggatgataacgaactgccaaaatacattaagcatgatagatttcgagttcctccgaaggaaaatgcctact |
572534 |
T |
|
| Q |
319 |
tgttggattggtgttttagacatctacactatgaggtggatctttctccagttgtgtaacctggttattgtacacattgtagcctgtcatatttgtgttt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
572533 |
tgttggattggtgttttagacatctacactatgaggtggatctttctccagttgtgtaacctggttattgtacacattgtagcctgtcatatttgtgttt |
572434 |
T |
|
| Q |
419 |
ggaccatgttttttatgtttcccttttgttttccaataatttgactagactgaaaaaacatgttatggtgtattgtttcaacattatagaactattgaaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
572433 |
ggaccatgttttttatgtttcccttttgttttccaataatttgactagactgaaaaaacatgttatggtgtattgtttcaacattatagaactattgaaa |
572334 |
T |
|
| Q |
519 |
gcgtaaagtttaacatttcctattttttagtcgcaaatttgggttgggttacatattcaacaatgaaaagtccatcaaagtccactaatttgagacggat |
618 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
572333 |
gcataaagtttaacatttcctattttttagtcgcaaatttgggttgggttacatattcaacaatggaaagtccatcgaagtccactaatttgagacggat |
572234 |
T |
|
| Q |
619 |
tgaagttttagtcccaaatttgggacggaatttgtatttccgtctcaactgaatccaaaatttagtggaaatcaaaggcgggaatattggcgccactgtt |
718 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
572233 |
tgaagttttagtagcaaatttgggacggaattagtatttccgtctcaactgaatccaaaatttagtggaaatcaaaggcgggaatattggtgccactgtt |
572134 |
T |
|
| Q |
719 |
atgaaggaatgttatttaattttctgtcacaattgatatattaattattaattttaatg--nnnnnnnntcttttaagaaaaaagtatcggaaaactcaa |
816 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
572133 |
atgacggaatgttatttaattttctgtcacaattgatatattaattattaatttaaatgaaaaaaaaaatcttttaagaaaaaagtatcggaaaactcaa |
572034 |
T |
|
| Q |
817 |
taccaattcattcaactttctctctctcgttcatctc |
853 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
572033 |
taccaattcattcaactttctctctctcgttcatctc |
571997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Complemental strand, 553001 - 552507
Alignment:
| Q |
19 |
atggacaacttttagtgattcatattgcttcccaagaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttggg |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
553001 |
atggacaacttttattgattcatattgcttctgaggaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttggg |
552902 |
T |
|
| Q |
119 |
tgacattgcattattttataattctggggaacacttctatgcattgagcaacccaagaaggtggggttttgaaagcaactctttgtatgccatcaatctt |
218 |
Q |
| |
|
||||||||||||||||||| ||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
552901 |
tgacattgcattattttatgcttccggggaatacttcaatgcattgagcaacccgagaaggtggggttttgaaagcaactctttgtatgccatcaatctt |
552802 |
T |
|
| Q |
219 |
tcatccacaacatgtatagtgtgtttaggggatgataacgaactgccaaaatacattaagcatgatagatttcgagttcctccgaaggaaaatgcctact |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
552801 |
tcatccacaacatgtatagtgtgtttaggggatgataacgaactgccaaaatacattaaggatgatagatttcgagttcctccgaaggaaaatgcctact |
552702 |
T |
|
| Q |
319 |
tgttggattggtgttttagacatctacactatgaggtggatctttctccagttgtgtaacctggttattgtacacattgtagcctgtcatatttgtgttt |
418 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||| |||| || |||||||||||||| ||||||||||| ||| ||||||| ||| |
|
|
| T |
552701 |
tgctggattggtgttttagacatctacagtatgaggtggatctttcgccagatgagtaacctggttatt---cacattgtagcttgtgatatttgctttt |
552605 |
T |
|
| Q |
419 |
ggaccatgttttttatgtttcccttttgttttccaataatttgactagactgaaaaaacatgttatggtgtattgtttcaacattatagaactattga |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
552604 |
ggaccatgttttttatgtttcccttttgttttccaataatttgactagaatgaaaaaacatgtcatggtgtatggtttcaacattagagaacgattga |
552507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Complemental strand, 485982 - 485485
Alignment:
| Q |
19 |
atggacaacttttagtgattcatattgcttcccaagaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttggg |
118 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
485982 |
atggacaacttttagtggttcatattgagtccgaggaaatattgaatgtttacaagatagacttctcaaccatgaattatgtcaagctggaaactttggg |
485883 |
T |
|
| Q |
119 |
tgacattgcattattttataattctggggaacacttctatgcattgagcaacccaagaaggtggggttttgaaagcaactctttgtatgccatcaatctt |
218 |
Q |
| |
|
|||||||| ||||||||| ||| |||||| ||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
485882 |
cgacattgccttattttatgcttcgggggaatacttctatgcattgaacaacccgaggaggtggggttttgaaagcaactctttgtatgccatcaatctt |
485783 |
T |
|
| Q |
219 |
tcatccacaacatgtatagtgtgtttaggggatgataacgaactgccaaaatacattaagcatgatagatttcgagttcctccgaaggaaaatgcctact |
318 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
485782 |
tcatcgacaacatgtaaagtgtgtttaggggatgataacagactgccaaaatacattaagcatgatagaactcgagttcctccaacggaaaatgcctact |
485683 |
T |
|
| Q |
319 |
tgttggattggtgttttagacatctacactatgaggtggatctttctccagttgtgtaacctggttattgtacacattgtagcctgtcatatttgtgttt |
418 |
Q |
| |
|
|| |||||||||| |||||||||| ||| |||||||||||| ||||||||| || ||||| ||||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
485682 |
tgctggattggtgctttagacatcaacaatatgaggtggatttttctccagatgagtaacatggttattgtacacaatgtagcttgtgatatttgtgttt |
485583 |
T |
|
| Q |
419 |
ggaccatgttttttatgtttcccttttgttttccaataatttgactagactgaaaaaacatgttatggtgtattgtttcaacattatagaactattga |
516 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| ||||||||||| |
|
|
| T |
485582 |
ggaccatgttctttatgatgcccttttgttttccaataatttgactagactaaaaaaacatgtcatggtgtatggtttcaacattagagaactattga |
485485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 19 - 496
Target Start/End: Complemental strand, 540805 - 540323
Alignment:
| Q |
19 |
atggacaacttttagtgattcatattgcttcccaagaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttggg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
540805 |
atggacaacttttagtgattcatattgcttccgaggaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttggg |
540706 |
T |
|
| Q |
119 |
tgacattgcattattttataattctggggaacacttctatgcattgagcaacccaagaaggtggggttttgaaagcaactctttgtatgccatcaatctt |
218 |
Q |
| |
|
||||||||||||||||||| ||| |||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
540705 |
tgacattgcattattttatgcttccggggaatacttcaatgcgttgagcaacccgagaaggtggggttttgaaagcaactctttgtatgccatcaatctt |
540606 |
T |
|
| Q |
219 |
tcatccacaacatgtatagtgtgtttaggggatgataacgaactgccaaaatacattaagcatgatagatttcgagttcctccgaaggaaaatgcctact |
318 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
540605 |
tcatccacaacatgtaaagtgtgtttaggggatgataacaaactgccaaaatacattaagcatgatagatttcgagttcctccaaaggaaaatgcctact |
540506 |
T |
|
| Q |
319 |
tgttggattggtgttttagacatctacactatgaggtggatctttctccagttgtgtaacctggttattgtacacattgtagcctgtcatatttgtgttt |
418 |
Q |
| |
|
|| |||||||||| |||| ||||| ||| |||||||||||| ||||| || || ||||| ||||||||||| ||| |||||| ||| || |||| ||| |
|
|
| T |
540505 |
tgctggattggtgctttaaacatcaacaatatgaggtggattattctctagatgagtaacatggttattgtagacagtgtagcttgtgattgttgtattt |
540406 |
T |
|
| Q |
419 |
ggaccatgttttttatgtttcccttttgtt------ttccaataatttgactagactgaaaaaacatgttatggtgtattgttt |
496 |
Q |
| |
|
||| |||||| ||| |||||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| |||| |
|
|
| T |
540405 |
ggaacatgttctttgtgtttccctttttttttttgcttccaataatttgactagactg-aaaaacatgtcatggtgtatggttt |
540323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 563104 - 562764
Alignment:
| Q |
19 |
atggacaacttttagtgattcatattgcttcccaagaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttggg |
118 |
Q |
| |
|
|||||||||||||||||||||||||| | || ||||||||||| ||||| |||| || |||||||||| || ||||| | | ||| ||||||||||||| |
|
|
| T |
563104 |
atggacaacttttagtgattcatattacatctcaagaaatattaaatgtgtacataatcgacttctcaatcaagaattttgttaagttggaaactttggg |
563005 |
T |
|
| Q |
119 |
tgacattgcattattttataattctggggaacacttctatgcattgagcaacccaagaaggtggggttttgaaagcaactctttgtatgccatcaatctt |
218 |
Q |
| |
|
||||||||||||||||||| ||| | ||| ||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
563004 |
tgacattgcattattttatgcttcgagtgaatacttctatgcattgaacaaccctgaaaggtggggttttgaaagcaactctctgcatgccatcaatctt |
562905 |
T |
|
| Q |
219 |
tcatccacaacatgtatagtgtgtttaggggatgataacgaactgccaaaatacattaagcatgatagatttcgagttcctccgaaggaaaatgcc-tac |
317 |
Q |
| |
|
||||| | | ||| | ||| ||||||||||||| ||| |||||||||||||||||| ||| ||| || |||| || || | || |||| || ||| |
|
|
| T |
562904 |
tcatctatcaaatgcacagtatgtttaggggatgtcaacaaactgccaaaatacattaggcaagatcgacatcgaatttctgc-tagaaaaagaccatac |
562806 |
T |
|
| Q |
318 |
ttgttggattggtgttttagacatctacactatgaggtggat |
359 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
562805 |
ttgttggattggtgttttaaacatctacactatgaggtggat |
562764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 530038 - 529702
Alignment:
| Q |
19 |
atggacaacttttagtgattcatattgcttcccaagaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttggg |
118 |
Q |
| |
|
|||||||||||||||||||||||||| | || ||||||||||| ||||| |||||||| |||||||||| || ||||| | |||| ||||||||||||| |
|
|
| T |
530038 |
atggacaacttttagtgattcatattacatctcaagaaatattaaatgtgtacaagatcgacttctcaatcaagaattttgtcaacttggaaactttggg |
529939 |
T |
|
| Q |
119 |
tgacattgcattattttataattctggggaacacttctatgcattgagcaacccaagaaggtggggttttgaaagcaactctttgtatgccatcaatctt |
218 |
Q |
| |
|
||||||||||||||| ||| |||| | ||| ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
529938 |
tgacattgcattattatatgcttctagtgaatacttctatgcattgacaaaccctgaaaggtggggttttgaaagaaactctttgtatgccatcaatctt |
529839 |
T |
|
| Q |
219 |
tcatccacaacatgtatagtgtgtttaggggatgataacgaactgccaaaatacattaagcatgatagatttcgagttcctccgaaggaaaatgcc-tac |
317 |
Q |
| |
|
||||| | | ||| | ||| ||||||||||||| ||| |||||||||||||||||| ||| || || |||| | || | || |||| || ||| |
|
|
| T |
529838 |
tcatctattaaatgcacagtatgtttaggggatgtcaacaaactgccaaaatacattaggcaagaccgacatcgaatctctgc-tagaaaaagaccatac |
529740 |
T |
|
| Q |
318 |
ttgttggattggtgttttagacatctacactatgaggt |
355 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
529739 |
ttgttggattggtgttttaaacatctacactatgaggt |
529702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 30858895 - 30858827
Alignment:
| Q |
69 |
tacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttat |
137 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30858895 |
tacaagatagacttatcaaccatggattatattaagttggaaactttgggtgacattgcattattttat |
30858827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 38866713 - 38866575
Alignment:
| Q |
69 |
tacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttataattctggggaacacttctatgcattgagca |
168 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||| || | | | || | | ||||||||||| || |
|
|
| T |
38866713 |
tacaagatagacttctcaaccatgacttatgtcaagttggaatctttgggtgacattgcattatttcatgctccaaagaaaaagtactatgcattgaaca |
38866614 |
T |
|
| Q |
169 |
acccaagaaggtggggttttgaaagcaactctttgtatg |
207 |
Q |
| |
|
||||||| | |||||||| ||||| ||| ||| |||||| |
|
|
| T |
38866613 |
acccaagcatgtggggttatgaaaacaattctatgtatg |
38866575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 39193380 - 39193299
Alignment:
| Q |
56 |
aatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttat |
137 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||||||||||| ||||| || ||||||| | ||||||||||||||||||| |
|
|
| T |
39193380 |
aatatttaatgtgtacaagatagatttctcaaccatgaattatgtcaagttgaaaactttagatgacattgcattattttat |
39193299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 14964156 - 14964229
Alignment:
| Q |
62 |
gaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattatttt |
135 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| | || ||||||||||||| |||||||||||||||| |
|
|
| T |
14964156 |
gaatgtgtacaagatcgacttctcaaccatgaattatgtgaaattggaaactttgggcgacattgcattatttt |
14964229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 553 - 594
Target Start/End: Complemental strand, 573036 - 572995
Alignment:
| Q |
553 |
aaatttgggttgggttacatattcaacaatgaaaagtccatc |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
573036 |
aaatttgggttgggttacatattcaacaatggaaagtccatc |
572995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 593
Target Start/End: Complemental strand, 541008 - 540968
Alignment:
| Q |
553 |
aaatttgggttgggttacatattcaacaatgaaaagtccat |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
541008 |
aaatttgggttgggttacatattcaacaatggaaagtccat |
540968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 593
Target Start/End: Complemental strand, 553204 - 553164
Alignment:
| Q |
553 |
aaatttgggttgggttacatattcaacaatgaaaagtccat |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
553204 |
aaatttgggttgggttacatattcaacaatggaaagtccat |
553164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 14964259 - 14964359
Alignment:
| Q |
156 |
tatgcattgagcaacccaagaaggtggggttttgaaagcaactctttgtatgccatcaatctttcatccacaacatgtatagtgtgtttaggggatgata |
255 |
Q |
| |
|
||||||||||||||||||| | |||||| | ||||||||||||| |||||| ||||| ||||| ||| |||| ||||| |||| || |||||||||| |
|
|
| T |
14964259 |
tatgcattgagcaacccaaacaagtggggatatgaaagcaactctgtgtatgtcatcagtcttttatctacaatatgtagtgtgtattctggggatgata |
14964358 |
T |
|
| Q |
256 |
a |
256 |
Q |
| |
|
| |
|
|
| T |
14964359 |
a |
14964359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 540264 - 540231
Alignment:
| Q |
513 |
ttgaaagcgtaaagtttaacatttcctatttttt |
546 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
540264 |
ttgaaagcataaagtttaacatttcctatttttt |
540231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 552436 - 552403
Alignment:
| Q |
513 |
ttgaaagcgtaaagtttaacatttcctatttttt |
546 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
552436 |
ttgaaagcataaagtttaacatttcctatttttt |
552403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 58 - 276
Target Start/End: Original strand, 55773824 - 55774042
Alignment:
| Q |
58 |
tattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttataattctggggaacacttcta |
157 |
Q |
| |
|
|||| ||||| || ||||| ||||| ||||||||||| ||| ||||| || |||||||||| |||||||||||||| ||| | |||| | | ||| ||| |
|
|
| T |
55773824 |
tatttaatgtgtataagattgacttttcaaccatgaagtatgtcaagttgaaaactttgggagacattgcattattatatgctcctggtggaaactacta |
55773923 |
T |
|
| Q |
158 |
tgcattgagcaacccaagaaggtggggttttgaaagcaactctttgtatgccatcaatctttcatccacaacatgtatagtgtgtttaggggatgataac |
257 |
Q |
| |
|
||| ||||||||||| | || ||||||| ||||||||||||| |||||| ||| ||| ||| || |||| ||| | ||||| | |||||||||||||| |
|
|
| T |
55773924 |
tgccttgagcaacccgaacagatggggttatgaaagcaactctgtgtatgtcattgatcgttcctctacaaaatgcagagtgtatgtaggggatgataac |
55774023 |
T |
|
| Q |
258 |
gaactgccaaaatacatta |
276 |
Q |
| |
|
| |||||||| ||||||| |
|
|
| T |
55774024 |
aagctgccaaagtacatta |
55774042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 58 - 275
Target Start/End: Original strand, 55838035 - 55838252
Alignment:
| Q |
58 |
tattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttataattctggggaacacttcta |
157 |
Q |
| |
|
|||| ||||| || ||||| ||||| ||||||||||| ||| ||||| || |||||||||| |||||||||||||| ||| | |||| | | ||| ||| |
|
|
| T |
55838035 |
tatttaatgtgtataagattgacttttcaaccatgaagtatgtcaagttgaaaactttgggagacattgcattattatatgctcctggtggaaactacta |
55838134 |
T |
|
| Q |
158 |
tgcattgagcaacccaagaaggtggggttttgaaagcaactctttgtatgccatcaatctttcatccacaacatgtatagtgtgtttaggggatgataac |
257 |
Q |
| |
|
||| ||||||||||| | || ||||||| ||||||||||||| |||||| | | ||| ||| || |||| ||| | ||||| | |||||||||||||| |
|
|
| T |
55838135 |
tgccttgagcaacccgaacagatggggttatgaaagcaactctgtgtatgtccttgatcgttcctctacaaaatgcagagtgtatgtaggggatgataac |
55838234 |
T |
|
| Q |
258 |
gaactgccaaaatacatt |
275 |
Q |
| |
|
| |||||||| |||||| |
|
|
| T |
55838235 |
aagctgccaaagtacatt |
55838252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 40027014 - 40027173
Alignment:
| Q |
62 |
gaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttataattctgggga---acacttctat |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||| ||||||||||||||| || ||||| | | |||| || |
|
|
| T |
40027014 |
gaatgtatacaagatagacttctcaaccatgaattatgtcaaactcgaagctttgggcaacattgcattatttt---atgctgggaagagaaacttttac |
40027110 |
T |
|
| Q |
159 |
gcattgagcaacccaagaaggtggggttttgaaagcaactctttgtatgccatcaatctttca |
221 |
Q |
| |
|
|||||||||||||| | |||||||| | ||| || |||||| |||||| ||||||||||||| |
|
|
| T |
40027111 |
gcattgagcaaccctaataggtggggatatgagagtaactctgtgtatgtcatcaatctttca |
40027173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 62 - 216
Target Start/End: Original strand, 40140804 - 40140958
Alignment:
| Q |
62 |
gaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttataattctggggaacacttctatgca |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||||| |||||||| || | || | ||| |||||| |
|
|
| T |
40140804 |
gaatgtatacaagatagacttctcaaccatgaattatgtcaaactggaaagtttgggcgacatttcattatttcatgctgctaacagaaactattatgca |
40140903 |
T |
|
| Q |
162 |
ttgagcaacccaagaaggtggggttttgaaagcaactctttgtatgccatcaatc |
216 |
Q |
| |
|
|| |||||||||| |||||||| | ||||||||||||| || ||| |||||||| |
|
|
| T |
40140904 |
ttaagcaacccaaataggtggggatatgaaagcaactctgtgcatgtcatcaatc |
40140958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 47873731 - 47873927
Alignment:
| Q |
60 |
ttgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttataattctggggaacacttctatg |
159 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||| || ||||| |||| ||||||||||||||| || ||| | ||| |||| |
|
|
| T |
47873731 |
ttgaatgtgtacaagatagacttctcaaccatgaattatgtcaaactagaaacactgggcgacattgcattatttaatgtttcgaacacaaactgttatg |
47873830 |
T |
|
| Q |
160 |
cattgagcaacccaagaaggtggggttttgaaagcaactctttgtatgccatcaatctttcatccacaacatgtatagtgtgtttaggggatgataa |
256 |
Q |
| |
|
||||||||||||| | ||||| || | ||| ||||||||| |||||||||||| | |||||| ||| ||||| ||||| || |||||||||||| |
|
|
| T |
47873831 |
cattgagcaacccgaacaggtgaggatatgagagcaactctgtgtatgccatcagttcttcatctacactatgtagagtgtattcaggggatgataa |
47873927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 2418032 - 2417957
Alignment:
| Q |
62 |
gaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttat |
137 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
2418032 |
gaatgtatacaagataggcttctcaaccatgaattatgtcaaactggaaactttgggcaacatttcattattttat |
2417957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 48179214 - 48179289
Alignment:
| Q |
62 |
gaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttat |
137 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
48179214 |
gaatgtatacaagatagatttctcaaccatgaattatgtcaaactagaaactttgggcaacattgcattattttat |
48179289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 49540740 - 49540664
Alignment:
| Q |
62 |
gaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttata |
138 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| |||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
49540740 |
gaatgtgtacaagatagacttctcaaccatggattatgtcaaacaagaaactttgggcgacattgcattattttata |
49540664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 45196622 - 45196694
Alignment:
| Q |
63 |
aatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattatttt |
135 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
45196622 |
aatgtgtacaagataggcttctcaactatgaattacgtcagactgaaaactttgggtgacattgcattatttt |
45196694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 41185863 - 41185929
Alignment:
| Q |
69 |
tacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattatttt |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||| |
|
|
| T |
41185863 |
tacaagatagacttctcaaccatgaattatgtcagactaaaaactttgggcaacattgcattatttt |
41185929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 49440607 - 49440541
Alignment:
| Q |
69 |
tacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattatttt |
135 |
Q |
| |
|
|||||||||||||||||||| |||| |||| || | |||||||||||||||||||||| ||||||| |
|
|
| T |
49440607 |
tacaagatagacttctcaactatgacttatgtcgaattggaaactttgggtgacattgcgttatttt |
49440541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 47873981 - 47874054
Alignment:
| Q |
319 |
tgttggattggtgttttagacatctacactatgaggtggatctttctccagttgtgtaacctggttattgtaca |
392 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| ||| |||||||||||| ||||| || ||||||||| |
|
|
| T |
47873981 |
tgttggattgttgttttagacatctacgatatgaggttgatttttctccagttgagtaacttgcatattgtaca |
47874054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 2417809 - 2417750
Alignment:
| Q |
319 |
tgttggattggtgttttagacatctacactatgaggtggatctttctccagttgtgtaac |
378 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||| |||| |||||| ||||| |
|
|
| T |
2417809 |
tgttggattggtgttttagacatctacaatatgaggtagattattcttcagttgagtaac |
2417750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 40141056 - 40141115
Alignment:
| Q |
319 |
tgttggattggtgttttagacatctacactatgaggtggatctttctccagttgtgtaac |
378 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||| ||||| ||||| ||||| |
|
|
| T |
40141056 |
tgttggattggtgttttagacatctacaatatgaggtagattattctctagttgagtaac |
40141115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 49287236 - 49287306
Alignment:
| Q |
64 |
atgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattt |
134 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| | || ||| ||||||||| ||||||| ||||||| |
|
|
| T |
49287236 |
atgtgtacaagatagacttctcaaccatgagttatgttaaactgaaaactttggacgacattgtattattt |
49287306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 9e-20; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 3048119 - 3048237
Alignment:
| Q |
19 |
atggacaacttttagtgattcatattgcttcccaagaaatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttggg |
118 |
Q |
| |
|
||||||| ||||||||| |||||||| ||| | | || ||| ||||| ||||||||||| |||||||||||| ||||| ||||| || ||||||| || |
|
|
| T |
3048119 |
atggacatcttttagtgcttcatattatgtccaaggtaacatttaatgtgtacaagatagatttctcaaccatggattatgtcaagttgaaaactttagg |
3048218 |
T |
|
| Q |
119 |
tgacattgcattattttat |
137 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
3048219 |
tgacattgcattattttat |
3048237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 34608863 - 34608927
Alignment:
| Q |
71 |
caagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattatttt |
135 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
34608863 |
caagatagacttctctaccatgaattatatcaaattggaatctttgggtgacattgcaatatttt |
34608927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 34605778 - 34605844
Alignment:
| Q |
69 |
tacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattatttt |
135 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
34605778 |
tacaagatagacttctctaccatggattatgtcaagttggaatctttgggtgacattgcaatatttt |
34605844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 33465981 - 33465913
Alignment:
| Q |
69 |
tacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttat |
137 |
Q |
| |
|
||||||||||||||||| || ||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
33465981 |
tacaagatagacttctctactatggattatgtcaagttggaatctttgggtgacattgcaatattttat |
33465913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 34727055 - 34727121
Alignment:
| Q |
69 |
tacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattatttt |
135 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||| ||||| |||||| |||||||||| |||||| |
|
|
| T |
34727055 |
tacaagatagacttctctaccatggattatgtcaagttggaatctttggctgacattgcaatatttt |
34727121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 31266651 - 31266720
Alignment:
| Q |
69 |
tacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttata |
138 |
Q |
| |
|
||||||||||||||| |||||||||||||| || | ||| | |||||||| ||||||||||||||||||| |
|
|
| T |
31266651 |
tacaagatagacttcacaaccatgaattatgtcgaactgaacactttgggcgacattgcattattttata |
31266720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 43156542 - 43156460
Alignment:
| Q |
56 |
aatattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttata |
138 |
Q |
| |
|
||||||||| || || |||||||||||||||||||||| |||| |||| ||| ||||||| || ||||||||||| |||||| |
|
|
| T |
43156542 |
aatattgaaagtgtataagatagacttctcaaccatgagttatgtcaaactgaaaactttaggcaacattgcattactttata |
43156460 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 15924 - 15863
Alignment:
| Q |
74 |
gatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattatttt |
135 |
Q |
| |
|
||||||||||||||| |||| |||| ||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
15924 |
gatagacttctcaacgatgagttatgtcaagctagaaactttgggtgaccttgcattgtttt |
15863 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 25837263 - 25837200
Alignment:
| Q |
58 |
tattgaatgtatacaagatagacttctcaaccatgaattatatcaagctggaaactttgggtga |
121 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
25837263 |
tattggatgtgtacaaaatagacttctcaaccatgaattatgagaagctagaaactttgggtga |
25837200 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 32347672 - 32347607
Alignment:
| Q |
72 |
aagatagacttctcaaccatgaattatatcaagctggaaactttgggtgacattgcattattttat |
137 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || ||||||| || ||| |||||||| ||||| |
|
|
| T |
32347672 |
aagatagacttctcaaccatgaattatgtcaaattgaaaactttaggcgacgttgcattactttat |
32347607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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