View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_108 (Length: 207)
Name: NF2371_low_108
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_108 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 26642831 - 26643004
Alignment:
| Q |
17 |
gagatatagagtaggggttcgccgtttcaaatttcaatgattctgttttactggttgataatgctgtgcttgaccttatgttggaagttgaagtttttct |
116 |
Q |
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| T |
26642831 |
gagatatagagtaggggttcgccgtttcaaatttcaatgattctgttttactggttgataatgctgtgcttgaccttatgttggaagttgaagtttttct |
26642930 |
T |
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| Q |
117 |
tgtgctttgatatcatccttgttcaattgcgttgatgaaagtctgatatattattctctgttggagtacagagt |
190 |
Q |
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| T |
26642931 |
tgtgctttgatatcatccttgttcaattgcgttgatgaaagtctgatatattgttctctgttggagtacagagt |
26643004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 26639343 - 26639522
Alignment:
| Q |
12 |
gagcagagatatagagtaggggttcgccgtttcaaatttcaatgattctgttttactggttgataatgctgtgcttgaccttatgttggaagttgaag-t |
110 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26639343 |
gagctgagatatagagtaggggttcgccgcttcaaatttcaatgattctgttttactggttgataatgctgtgcttgaccttatgttggaagttgaagtt |
26639442 |
T |
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| Q |
111 |
ttttcttgtgctttgatatcatccttgttcaattgcgttgatgaaagtctgatatattattctctgttggagtacagagt |
190 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26639443 |
tttttttgtgctttgatatcatccttgttcaattgcgttgatgaaagtctgatatactattctctgttggagtacagagt |
26639522 |
T |
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