View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_12 (Length: 509)
Name: NF2371_low_12
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 12 - 491
Target Start/End: Original strand, 41518300 - 41518782
Alignment:
| Q |
12 |
atgaaatggggtgaagaagaggatggtgtgttggtgaagaaggaagatattgaaagaggaatagagaagttaatggatgagacaagtgaatgtaaagaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41518300 |
atgaaatggggtgaagaagaggatggtgtgttggtgaagaaggaagatattgaaagaggaatagagaagttaatggatgagacaagtgaatgtaaagaaa |
41518399 |
T |
|
| Q |
112 |
gaagaaaaaggattagagagcttgctgagatggctaaaaaggctgtagaaaaaggtggatcttctcactctaatatttctttgttcatccaagatatcat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41518400 |
gaagaaaaaggattagagagcttgctgagatggctaaaaaggctgtagaaaaaggtggatcttctcactctaatatttctttgttcatccaagatatcat |
41518499 |
T |
|
| Q |
212 |
gaagaaaaataaagatatgatgtcatcatttaccaatggaaatgccaattcaaagtgaaaatgcatgtatcactttcagtctttaggcaaagtggcaaga |
311 |
Q |
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| T |
41518500 |
gaagaaaaataaagatatgatgtcatcatttaccaatggaaatgccaattcaaaatgaaaatgcatgtatcactttcagtctttaggcaaagtggcaaga |
41518599 |
T |
|
| Q |
312 |
actacttgaaaatcatttattatgtctgannnnnnnnngttactattatgtttgattggtgtattgtttcctttattaaaagga---nnnnnnnnnctct |
408 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41518600 |
actacttgaaaatcatttattatgtctgatttttttttgttactattatgtttgattggtgtattgtttcctttattaaaaggatttttttttcttctct |
41518699 |
T |
|
| Q |
409 |
aaatcaattttctaactcatttaaaaggatttgtaatggggaaatgatattcatagagaacctatacaatacgaagatatcac |
491 |
Q |
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| T |
41518700 |
aaatcaattttctaactcatttaaaagtatttgtaatggggaaatgatattcatagagaaccaatacaatacgaagatatcac |
41518782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 41537279 - 41537539
Alignment:
| Q |
12 |
atgaaatggggtgaagaagaggatggtgtgttggtgaagaaggaagatattgaaagaggaatagagaagttaatggatgagacaagtgaatgtaaagaaa |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41537279 |
atgaaatggggtgaagaagaggatggtgtgttggtgaagaaggaagatattgaaagaggaatagaaaagttaatggatgagacaagtgaatgtaaagaaa |
41537378 |
T |
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| Q |
112 |
gaagaaaaaggattagagagcttgctgagatggctaaaaaggctgtagaaaaaggtggatcttctcactctaatatttctttgttcatccaagatatcat |
211 |
Q |
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| T |
41537379 |
gaagaaaaaggattagagagcttgctgagatggctaaaaaggctgtagaaaaaggtggatcttctcactctaatatttctttgttcatccaagatatcat |
41537478 |
T |
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| Q |
212 |
gaagaaaaataaagatatgatgtcatcatttaccaatggaaatgccaattcaaagtgaaaa |
272 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |
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| T |
41537479 |
gaagaaaaataaagatatgatgtcatcatttatccatggaaatgccaattcaaaatgaaaa |
41537539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 8136378 - 8136197
Alignment:
| Q |
35 |
tggtgtgttggtgaagaaggaagatattgaaagaggaatagagaagttaatggatgagacaagtgaatgtaaagaaagaagaaaaaggattagagagctt |
134 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8136378 |
tggtgtgttggtgaagaaggaagatgttgaaagaggaatagaagtgttaatggatgagacaagtgaatgtaaagaaagaagaaaaaggattagagagctt |
8136279 |
T |
|
| Q |
135 |
gctgagatggctaaaaaggctgtagaaaaaggtggatcttctcactctaatatttctttgttcatccaagatatcatgaaga |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| |
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| T |
8136278 |
gctgagattgctaaaaaggctgtagaaaaaggtggatcttctcactctaatgttgttttgttcatccaagatatcattaaga |
8136197 |
T |
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