View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_2 (Length: 789)
Name: NF2371_low_2
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 421 - 789
Target Start/End: Original strand, 19275371 - 19275731
Alignment:
| Q |
421 |
cttatgagacaaatttgagttattgtctcgctcccaattaaattttgtcttacatgttaaatnnnnnnnn-taacaagctaacaagttagcggaccggcc |
519 |
Q |
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| T |
19275371 |
cttatgagacaaatttgagttattgtgtcgctcccaattaaattttgtctaacacgtcgaataaaaaaaaataacaagctaacaagttagcggaccggcc |
19275470 |
T |
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| Q |
520 |
catcccatctctgtctcgatacgctttttcaacaagctaaacgaggtggaccaacggaagggaacaaggttaaaacttcaactcaagccgctaaaaacaa |
619 |
Q |
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| T |
19275471 |
catcccatctctgtctcgatacgctttttcaacgagctaaacgaggcggaccaacagaaagaaacaaggttaaaacttcaactaaagccgctaaaaacaa |
19275570 |
T |
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| Q |
620 |
tgtgctagacgagtcggtcctgttggttggtcgttttttgccacccctaataaatgttaaatgtttttcattttatgttacccacggcttttccatgtgt |
719 |
Q |
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| T |
19275571 |
tgtgctagacgagtcggtccggttggttggtcgttttttgccacccctaataaatgttaaatgtttttcattttatgttacccacggcttttccatgtgt |
19275670 |
T |
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| Q |
720 |
attactcacacaaattgaccatgtgtaaaatattcatgggttattgaaattattcttgtagtttgatcac |
789 |
Q |
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| T |
19275671 |
attactcacacaaattgaccatgtgt---------atgggttattgaaattattcttgtagtttgatcac |
19275731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 19274968 - 19275295
Alignment:
| Q |
16 |
cagaaggaaaaacatgcaccaagcaagaaaaagaagaaaatctattcatcaa-caacaacatatatgaccattgacgaaggaaagaccaacactagagat |
114 |
Q |
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| T |
19274968 |
cagaaggaaaaacatacaccaagcaagaaaaagaagaaaatctattcaacaatcaacaacatatatgaccaatgacgaag-aaagaccaacactagagat |
19275066 |
T |
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| Q |
115 |
gaaaaacaatagtctaaggaggttcgctcaattagtcaagcctgaaaacaaccagcatcaaatggaaatcaaaacaagatttatcaaactcttgcactca |
214 |
Q |
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| T |
19275067 |
gaaaaacaatagtttaaggaggttcagtcaattagtcaagcctgaaa-caaccagcagcaaatggaaatcaaaacaggatttatccaactcttgcactca |
19275165 |
T |
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| Q |
215 |
aattcattcatcagaatggaccatgaagatcccatcaaccaaatggacgagacgacacgagccaagtcaatttgacggaccgactcgtcaaaacaaaaac |
314 |
Q |
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| T |
19275166 |
aattcattcatcggaatggatcatgtagatctcatcaaccaaatggacgagacgacatgagccaagtcaatttgacggaccgactcgtcaaaacaaaaac |
19275265 |
T |
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| Q |
315 |
tgataattttattgtatttttttgacaatt |
344 |
Q |
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| T |
19275266 |
tgataattttattgtatttttttgacaatt |
19275295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 151 - 253
Target Start/End: Original strand, 19624665 - 19624767
Alignment:
| Q |
151 |
caagcctgaaaacaaccagcatcaaatggaaatcaaaacaagatttatcaaactcttgcactcaaattcattcatcagaatggaccatgaagatcccatc |
250 |
Q |
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|||||||| |||||||| || || ||||||||||||||| || ||||| ||||| | ||| ||||| | |||| | ||||||||||||||||||||||| |
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| T |
19624665 |
caagcctggaaacaaccggcgacagatggaaatcaaaacaggagttatctaactcctacacgcaaatccgttcaccggaatggaccatgaagatcccatc |
19624764 |
T |
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| Q |
251 |
aac |
253 |
Q |
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| T |
19624765 |
aac |
19624767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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