View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_low_21 (Length: 431)

Name: NF2371_low_21
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_low_21
NF2371_low_21
[»] chr8 (2 HSPs)
chr8 (19-397)||(27972848-27973226)
chr8 (19-397)||(28030117-28030495)
[»] chr7 (3 HSPs)
chr7 (103-397)||(45726002-45726296)
chr7 (19-95)||(45745504-45745581)
chr7 (20-83)||(15648972-15649035)
[»] chr5 (4 HSPs)
chr5 (103-397)||(27657656-27657950)
chr5 (103-397)||(4883920-4884214)
chr5 (19-95)||(4885624-4885700)
chr5 (19-86)||(27652570-27652637)
[»] chr4 (5 HSPs)
chr4 (103-397)||(22114025-22114319)
chr4 (103-397)||(38719316-38719610)
chr4 (20-95)||(38717159-38717235)
chr4 (19-95)||(22102326-22102403)
chr4 (20-83)||(12633441-12633504)
[»] chr3 (2 HSPs)
chr3 (144-397)||(22601078-22601329)
chr3 (20-83)||(12104946-12105009)
[»] chr2 (1 HSPs)
chr2 (106-213)||(39079792-39079894)


Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 27973226 - 27972848
Alignment:
Q  19 gaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgacttaatgtgaaaaggtgccttccaagatacaaaacaa 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27973226 gaaaggtgatgatgtggctatttgatgctgacgtgtcgctacttgctggcagggggtaaatgacttaatgtgaaaaggtgccttccaagatacacaacaa 27973127  T
Q  119 tactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcattgtttctatcttgactt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  27973126 tactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttgtcttccacaccttttcattgtttctatcttgactt 27973027  T
Q  219 aaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttcaaattatccttcttcc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27973026 aaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttcaaattatcattcttcc 27972927  T
Q  319 tcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27972926 tcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 27972848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 28030495 - 28030117
Alignment:
Q  19 gaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgacttaatgtgaaaaggtgccttccaagatacaaaacaa 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28030495 gaaaggtgatgatgtggctatttgatgctgacgtgtcgctacttgctggcagggggtaaatgacttaatgtgaaaaggtgccttccaagatacacaacaa 28030396  T
Q  119 tactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcattgtttctatcttgactt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| || |||||||||||||||||||    
T  28030395 tactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttgttttccactcctttttattgtttctatcttgactt 28030296  T
Q  219 aaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttcaaattatccttcttcc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28030295 aaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttcaaattatctttcttcc 28030196  T
Q  319 tcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 397  Q
    |||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||    
T  28030195 tcaacagtccaaccttccagacatcttgttcaatttttccattaagcagccccaaagcctcagcctcatcaacccatac 28030117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 103 - 397
Target Start/End: Complemental strand, 45726296 - 45726002
Alignment:
Q  103 ccaagatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcatt 202  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45726296 ccaagatacacaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttgtcttccacacctcttcatt 45726197  T
Q  203 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45726196 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 45726097  T
Q  303 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  45726096 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtgtcccattaagcagccccaaagcctcagcctcatcaacccatac 45726002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 45745581 - 45745504
Alignment:
Q  19 gaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtaggg-ggtaaatgacttaatgtgaaaag 95  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  45745581 gaaaggtgatgatgtggctatttgatgttgacgtgtcactacttgctggcagggaggtaaatgacttaatgtgaaaag 45745504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 15648972 - 15649035
Alignment:
Q  20 aaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgact 83  Q
    |||||||||| |||||||||||||||||||||||||  | |||||||| |||| ||||||||||    
T  15648972 aaaggtgatgatgtggctatttgatgctgacgtgtcaatccttgctggcagggcgtaaatgact 15649035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 103 - 397
Target Start/End: Original strand, 27657656 - 27657950
Alignment:
Q  103 ccaagatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcatt 202  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27657656 ccaagatacacaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttgtcttccacacctcttcatt 27657755  T
Q  203 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27657756 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 27657855  T
Q  303 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  27657856 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtgtcccattaagcagccccaaagcctcagcctcatcaacccatac 27657950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 103 - 397
Target Start/End: Complemental strand, 4884214 - 4883920
Alignment:
Q  103 ccaagatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcatt 202  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |||    
T  4884214 ccaagatacacaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttgttttccacgcctctttatt 4884115  T
Q  203 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 302  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4884114 gtttctatcttgacttaaaatttgcattttctctatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 4884015  T
Q  303 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||    
T  4884014 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtgtcccattaagcagccccaaagcctcagcctcaccaacccatac 4883920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 4885700 - 4885624
Alignment:
Q  19 gaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgacttaatgtgaaaag 95  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  4885700 gaaaggtgatgatgtggctatttgatgctgacgtgtcgctacttactggcagggggtaaatgacttaatgtgaaaag 4885624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 27652570 - 27652637
Alignment:
Q  19 gaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgacttaa 86  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  27652570 gaaaggtgatgatgtggctatttgatgttgacgtgtcactacttgctggcagggggtaaatgacttaa 27652637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 103 - 397
Target Start/End: Original strand, 22114025 - 22114319
Alignment:
Q  103 ccaagatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcatt 202  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22114025 ccaagatacacaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttgtcttccacacctcttcatt 22114124  T
Q  203 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22114125 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 22114224  T
Q  303 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 397  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||||||||||    
T  22114225 aaattatccttcttcctcaacagtccaaccttccagacatcttgttcaaatgtcccattaagcagccccaaagcctcagcctcatcaacccatac 22114319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 103 - 397
Target Start/End: Original strand, 38719316 - 38719610
Alignment:
Q  103 ccaagatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcatt 202  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  38719316 ccaagatacacaacaatacaatcatatacttcaataacttgacttcattcatcaatgcatcaattctatcgagcaactttgtcttccacacctcttcatt 38719415  T
Q  203 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38719416 gtttctatcttgacttaaaatttgcattttctccatcaaaggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatctcttttcttc 38719515  T
Q  303 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  38719516 aaattatccttcttcctcaacagtccaaccttccagacatcttgatcaagtgtcccattaagcagccccaaagcctcagcctcatcaacccatac 38719610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 38717159 - 38717235
Alignment:
Q  20 aaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggta-gggggtaaatgacttaatgtgaaaag 95  Q
    |||| ||||| ||||||||||||||||||| ||||| || |||||||| | ||||||||||||||||||||||||||    
T  38717159 aaagttgatgatgtggctatttgatgctgatgtgtcacttcttgctgggaggggggtaaatgacttaatgtgaaaag 38717235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 22102326 - 22102403
Alignment:
Q  19 gaaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggta-gggggtaaatgacttaatgtgaaaag 95  Q
    ||||||||||| ||||||||||||||| ||||||| | ||| |  |||| | ||||||||||||||||||||||||||    
T  22102326 gaaaggtgatgatgtggctatttgatgttgacgtggcactattctctggcaggggggtaaatgacttaatgtgaaaag 22102403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 12633504 - 12633441
Alignment:
Q  20 aaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgact 83  Q
    |||||||||| ||||||||||||||| |||||||||  | |||||||| | || ||||||||||    
T  12633504 aaaggtgatgatgtggctatttgatgttgacgtgtcaatgcttgctggcaaggagtaaatgact 12633441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 144 - 397
Target Start/End: Original strand, 22601078 - 22601329
Alignment:
Q  144 acttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcattgtttctatcttgactt-aaaatttgcattttctccatcaaa 242  Q
    |||||| ||| ||||||||||||||||||||| | |  | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  22601078 acttcagtcagcaatgcatcaattctatccagtagcactgtcttccacacctcttcattgtttctatcttgactttaaaatttgtattttctccatcaaa 22601177  T
Q  243 ggtgccttccaaatatcatcaccaccattttgacaatcattacatgcatttcttttcttcaaattatccttcttcctcaacagtccaaccttccagacat 342  Q
     ||   ||||||||||||   | || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||    
T  22601178 tgtaatttccaaatatca---ctacaattttgccaataattacatgcatttcttttcttcaaattatccttcttcctcaacagtccagccttatagacat 22601274  T
Q  343 cttgatcaagtattccattaagcagccccaaagcctcagcctcatcaacccatac 397  Q
    ||||||||||| |||||||||||| ||||||||| || |||||||||||||||||    
T  22601275 cttgatcaagtgttccattaagcaaccccaaagcttcggcctcatcaacccatac 22601329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 12105009 - 12104946
Alignment:
Q  20 aaaggtgatggtgtggctatttgatgctgacgtgtcgctacttgctggtagggggtaaatgact 83  Q
    |||||||||| ||||||||||||||| |||||||||  | |||||| ||||||| |||||||||    
T  12105009 aaaggtgatgatgtggctatttgatgatgacgtgtcaatgcttgcttgtaggggttaaatgact 12104946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 39079792 - 39079894
Alignment:
Q  106 agatacaaaacaatactatcatgtacttcaataacttgacttcattcatcaatgcatcaattctatccagcaactttatcttccacacctcttcattgtt 205  Q
    ||||| ||||||||||||||||     ||||||||||||||||||||||||||||||||||||||| ||| | | || |||| || |||||  |||||||    
T  39079792 agatataaaacaatactatcat-----tcaataacttgacttcattcatcaatgcatcaattctattcagtagccttgtctttcaaacctccccattgtt 39079886  T
Q  206 tctatctt 213  Q
    ||||||||    
T  39079887 tctatctt 39079894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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