View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_24 (Length: 426)
Name: NF2371_low_24
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_24 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 9 - 408
Target Start/End: Original strand, 43067 - 43470
Alignment:
| Q |
9 |
agcagagacaacaccata----gccttcttaaccctctctttggttctcaaacttattgccaactgattaatcaaagttatgaaagaagagactcactct |
104 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43067 |
agcagagacaacaccatatttggccttcttaaccctctctttggttctcaaacttattgccaactgattaatcaaagttatgaaagaagagactcactct |
43166 |
T |
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| Q |
105 |
agaagcaaagagcatgaacaacaacataattagaacaaagacacgaacatgctatagcaaaatatagtagataaacaatgataaatgagtcatagcatcg |
204 |
Q |
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| T |
43167 |
agaagcaaagagcatgaacaacaacataattagaacaaagacacgaacatgctatagcaaaatatagtagataaacaatgataaatgagtcatagcatcg |
43266 |
T |
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| Q |
205 |
tacaaatcttgtgattttgaatatggctcttccaagatgttgtagaacaacacaaaacgatcatgtaaagttcttgtctaaacttcacatttggatgcac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43267 |
tacaaatcttgtgattttgaatatggctcttccaagatgttgtagaacaacacaaaacgatcatgtaaagttcttgtctaaacttcacatttgggtgcac |
43366 |
T |
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| Q |
305 |
taaaatgttaaatgaaatgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43367 |
taaaatgttaaatgaaatgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaa |
43466 |
T |
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| Q |
405 |
caat |
408 |
Q |
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|||| |
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| T |
43467 |
caat |
43470 |
T |
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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 408
Target Start/End: Original strand, 2681858 - 2681942
Alignment:
| Q |
321 |
atgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaacaat |
408 |
Q |
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| T |
2681858 |
atgagtgtgtaatgtgaaaatatacaaaaattggatattctgcacacaacaataa---aagaatactatttttatggaacaaaacaat |
2681942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 408
Target Start/End: Complemental strand, 5481453 - 5481369
Alignment:
| Q |
321 |
atgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaacaat |
408 |
Q |
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| T |
5481453 |
atgagtgtgtaatgtgaaaatatacaaaaattggatattctgcacacaacaataaa---agaatactatttttatggaacaaaacaat |
5481369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 26544537 - 26544584
Alignment:
| Q |
27 |
gccttcttaaccctctctttggttctcaaacttattgccaactgatta |
74 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
26544537 |
gccttcttaaccctctctttggttctcaaacttattccaaactgatta |
26544584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 408
Target Start/End: Original strand, 45005284 - 45005368
Alignment:
| Q |
321 |
atgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaacaat |
408 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| |
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| T |
45005284 |
atgagtgtgtaatgtgaaaatatacaaaaattggatattctgcacacaacaataa---aagaatactatttttatggaacaaaacaat |
45005368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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