View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_26 (Length: 408)
Name: NF2371_low_26
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 43241108 - 43240727
Alignment:
| Q |
18 |
aaacccttgcgctaggaatttccatttttcattatttcataatttgcttcatatatcaaacactttgcacttacaatctacaagaaaaaattattcaaat |
117 |
Q |
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| T |
43241108 |
aaacccttgcgctaggaatttccatttttcattatttcgtaatttgcttcatatatcaaacactttgcacttacaatctacaagaagaaattattcaaat |
43241009 |
T |
|
| Q |
118 |
gtaaagtaaaacactctacatattcaaccatcgatatactaagttacaaagaccacgatgtccattgaatataatacgggagacatttatttaagataat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43241008 |
gtaaagtaaaacactctacatattcaaccatcgatatactaagttacaaagaccacgatgtccattgaatataatacgggagacatttatttaagatcat |
43240909 |
T |
|
| Q |
218 |
cgaaaaagccaatgtagatatgataaggcatttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagttt |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43240908 |
cgaaaaagccaatgtagatatgataaggcatttataatttttgcagccaattcaacaatcatggaatttcctaatgaagtgtagtaatgttgtctagttt |
43240809 |
T |
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| Q |
318 |
acaaccataaaagtgtataatctgacttaataattaatgatggtacaatagagatgaatagccgaaattccgcaagtataat |
399 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43240808 |
acaatcataaaagtgtataatctgacttaataattaatgatggtacaatagagatgaatagccgaaattccgcaagtataat |
43240727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 247 - 399
Target Start/End: Original strand, 38927688 - 38927837
Alignment:
| Q |
247 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
346 |
Q |
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| T |
38927688 |
atttattattgttgcatccaattcaacaatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgactta |
38927785 |
T |
|
| Q |
347 |
ataattaatgatggtacaatagagatgaatagccgaaattccgcaagtataat |
399 |
Q |
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| |||||||||| |||||||||||| |||| ||||||||| ||||||||||| |
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|
| T |
38927786 |
aaaattaatgat-gtacaatagagaaaaatatccgaaattctgcaagtataat |
38927837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 43235789 - 43235667
Alignment:
| Q |
33 |
gaatttccatttttcattatttcataatttgcttcatatatcaaacactttgcacttacaatctacaagaaaaaattattcaaatgtaaagtaaaacact |
132 |
Q |
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||||||||||||||| ||||||| |||||||||||| |||| ||| | || ||||||||| ||| |||||| |||| ||||||||||||||||||| || |
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| T |
43235789 |
gaatttccatttttctttatttcctaatttgcttcagatataaaaaagtt-gcacttacattctgcaagaagaaataattcaaatgtaaagtaaaatacc |
43235691 |
T |
|
| Q |
133 |
ctacatattcaaccatcgatatac |
156 |
Q |
| |
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|||||||| ||||||| ||||||| |
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| T |
43235690 |
ctacatatccaaccattgatatac |
43235667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 43230225 - 43230152
Alignment:
| Q |
181 |
attgaatataatacgggagacatttatttaagataatcgaaaaagccaatgtagatatgataaggcatttatta |
254 |
Q |
| |
|
|||||||||||| ||||| ||||||| | ||||| || |||||| ||||||||||||||||||||||||||||| |
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|
| T |
43230225 |
attgaatataatgcgggatacatttactcaagatcattgaaaaaaccaatgtagatatgataaggcatttatta |
43230152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 43246929 - 43246892
Alignment:
| Q |
217 |
tcgaaaaagccaatgtagatatgataaggcatttatta |
254 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
43246929 |
tcgaaaaagccaatgtagatatgataaggcatgtatta |
43246892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 43253394 - 43253357
Alignment:
| Q |
217 |
tcgaaaaagccaatgtagatatgataaggcatttatta |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
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|
| T |
43253394 |
tcgaaaaagccaatgtagatatgataaggcatgtatta |
43253357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 247 - 399
Target Start/End: Original strand, 3570745 - 3570894
Alignment:
| Q |
247 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
346 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| |||| |||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||| |
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| T |
3570745 |
atttattattgttgcatccaattcaacaatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgactta |
3570842 |
T |
|
| Q |
347 |
ataattaatgatggtacaatagagatgaatagccgaaattccgcaagtataat |
399 |
Q |
| |
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| |||||||||| |||||||||||| |||| ||||||||| ||||||||||| |
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| T |
3570843 |
aaaattaatgat-gtacaatagagaaaaatatccgaaattctgcaagtataat |
3570894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 247 - 399
Target Start/End: Original strand, 46354114 - 46354263
Alignment:
| Q |
247 |
atttattatttttgcagccaattcaacaatcatagaatttcctaatgaagtgtagtaatgttgtctagtttacaaccataaaagtgtataatctgactta |
346 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||| |||| |||||||||| ||||||||| |||||| ||||| |||||||||||||||||||| ||| |
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| T |
46354114 |
atttattattgttgcatccaattcaacgatcaaggaatctcctaatgaaac--agtaatgttttctagtgtacaatcataaaagtgtataatctgattta |
46354211 |
T |
|
| Q |
347 |
ataattaatgatggtacaatagagatgaatagccgaaattccgcaagtataat |
399 |
Q |
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| |||||||||| |||||||||||| |||||| ||||||| ||||||||||| |
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| T |
46354212 |
aaaattaatgat-gtacaatagagaaaaatagctgaaattctgcaagtataat |
46354263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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