View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_28 (Length: 406)
Name: NF2371_low_28
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 30128964 - 30129066
Alignment:
| Q |
18 |
tgattaaggcttgattgacaaggtaaaagttttggttaggtgaacataagcgacttcatgagaaatccatggtttgtggattagttgctttatgcattgt |
117 |
Q |
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| T |
30128964 |
tgattaaggcttgattgacaaggtaaaagttttggttaggtgaacataagcgacttcatgagaaatccatggtttgtggattagttgctttatgcattgt |
30129063 |
T |
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| Q |
118 |
cat |
120 |
Q |
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||| |
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| T |
30129064 |
cat |
30129066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 30129785 - 30129890
Alignment:
| Q |
117 |
tcatccatggtattattgactattactcaatttttaaatagatctgctgttactttcctaaaaccaaaattaaataaaggtttcagcaataattatacat |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30129785 |
tcatccatggtattgttgactattactcaatttttacatagatctgctgttactttcctaaaaccaaaattaaataaaggtttcaacaataattatacat |
30129884 |
T |
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| Q |
217 |
ttatat |
222 |
Q |
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|||||| |
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| T |
30129885 |
ttatat |
30129890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 30129857 - 30129890
Alignment:
| Q |
230 |
aataaaggtttcaacaataattatacatttatat |
263 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30129857 |
aataaaggtttcaacaataattatacatttatat |
30129890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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