View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2371_low_29 (Length: 403)
Name: NF2371_low_29
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 93 - 385
Target Start/End: Original strand, 47027683 - 47027982
Alignment:
| Q |
93 |
taaaagattgattcacctttcctta----ttcttgaaataagataagaaatcatacaaattaaagtcacttattaattcctcaaaacaagataagaaa-- |
186 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
47027683 |
taaaagattgattcacctttccttaattattcttgaaataagataagaaatcatacaaattaaactcacttattaattcctcaaaacaagatatgttgtt |
47027782 |
T |
|
| Q |
187 |
-cta----ttgtatatgctgttttgataagtcgttgagttattggaaaatacagcattggcgcgcagagagttcagagagtctgtattgccttcaaaaac |
281 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47027783 |
tctacaacttgtataa----ttttgataagtcgttgagttattggaaaatacagcattggcgctcagagagttcagagagtctgtattgccttcaaaaac |
47027878 |
T |
|
| Q |
282 |
tactgtgaggagaaaaacatagaagggtaagcttcaaaatatcatgtctaattttctgtatgttttgaaaactctttggcaatacaatgttcatattctg |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47027879 |
tactgtgaggagaaaaacatagaagggtaagcttcaaaatatcatgtctaattttctttatgttttgaaaactctttggcaatacaatgttcatattctg |
47027978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 47027572 - 47027655
Alignment:
| Q |
10 |
aagaatataacattgattttaaaagggtggatgctcttgttcaccagctgaaaggcagcagctccaggtaatatattaatcttt |
93 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47027572 |
aagaaaataacattgattttaaaagggtggatgctcttgttcaccagctgaaaggcagcagctccaggtaatatattaatcttt |
47027655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 36582527 - 36582466
Alignment:
| Q |
21 |
attgattttaaaagggtggatgctcttgttcaccagctgaaaggcagcagctccaggtaata |
82 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
36582527 |
attgattttaagagaatggatgctcatgttcaccaattgaaaggtagcagctccaggtaata |
36582466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University