View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_30 (Length: 395)
Name: NF2371_low_30
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 65 - 382
Target Start/End: Original strand, 6029649 - 6029973
Alignment:
| Q |
65 |
gaagacattttggaggacatagaaactgaagacagcttggaggacataaacatcctttacccatgactctgaccaggctcaacttctcttcggttgaggt |
164 |
Q |
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| T |
6029649 |
gaagacatcttggaggatatagaaactgaagacagcttggaggacataaacatcctttacccatgactctgaccaggctcaacttctcttcggttgaggt |
6029748 |
T |
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| Q |
165 |
ttcgtggcagaatggatcgatgagagcaggagaagcttgccgctaagaatatcaaagagatgatagcattggaggagaagatttatttag----ttcnnn |
260 |
Q |
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| T |
6029749 |
tttgtggcagaatggatcgatgtgagcaggagaagcttgccgctaagaatatcaaagagatgatagcattggaggagaagatttatttagtttctttttt |
6029848 |
T |
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| Q |
261 |
nnnnnnnnnagg--aatactgaaataagactatatgcatattctccatctcctag-tgatataggtcacaaaaatttgtgcaatatgtcgtatgatccta |
357 |
Q |
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| T |
6029849 |
tttttttttaggttaatactgaaataagactatatgcatgttctccatctcctagttgatataggtcacaaaaatttgtgcaatatgtcatatgatccta |
6029948 |
T |
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| Q |
358 |
aaggttcctaataaatgcaactttt |
382 |
Q |
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| T |
6029949 |
aaggttcctaataaatgcaactttt |
6029973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 6029611 - 6029696
Alignment:
| Q |
1 |
tgagaaatttcgatttactttcgaatgggaagaaact-gaagacatcttagaggatatagaaactgaagacattttggaggacata |
85 |
Q |
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| T |
6029611 |
tgagaaatttcgatttactttcgaatgggaagaaactagaagacatcttggaggatatagaaactgaagacagcttggaggacata |
6029696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 6034503 - 6034625
Alignment:
| Q |
104 |
gaggacataaacatcctttacccatgactctgaccaggctcaacttctcttcggttgagg-tttcgtggcagaatggatcgatgagagcaggagaagctt |
202 |
Q |
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| T |
6034503 |
gaggacctaaacatcctttacc-ataaccctgacgaggctcgacgtctctttggtcgagggtttcgtggcagaatggatcgttgtgagcaggagaagctt |
6034601 |
T |
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| Q |
203 |
gccgctaagaatatcaaagagatg |
226 |
Q |
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| T |
6034602 |
gccgctaagaatttcaaagagatg |
6034625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6029329 - 6029382
Alignment:
| Q |
1 |
tgagaaatttcgatttactttcgaatgggaagaaactgaagacatcttagagga |
54 |
Q |
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| T |
6029329 |
tgagaaatttcgatttacgttcgaatgggaagacactgaagacatcttggagga |
6029382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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