View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_34 (Length: 387)
Name: NF2371_low_34
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 35109554 - 35109196
Alignment:
| Q |
1 |
attggacctatttttaacttctattttattgatcgtcaccgagaaacacttctattttacaatcaccatgaagaattttaaagcattcaacgactttctt |
100 |
Q |
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| T |
35109554 |
attggacctattttaaacttctattttattgatcatcaccgagaaacacttctattttacaatcaccatgaagaattttaaagcattcaacgactttctt |
35109455 |
T |
|
| Q |
101 |
cttgggtgaaatttaccgaaccatgaatgtccttgtgaatgcattctttctagcaagtgccaaggccgcctcaattcaacttagattgcccttatcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35109454 |
cttgggtgaaatttaccgaaccatgaatgtccttgtgaatgcattctttctagcaagtgccaaggccgcctcaattcaacttagattgcccttatcaaca |
35109355 |
T |
|
| Q |
201 |
ttctacctcctaagtcatcggtcctgatcaacatctacttcagtttcgcttgaagtgctcgtatgtacatcccttccatcgaaatgaggcggtggcttag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35109354 |
ttctacctcctaagtcatcggtcctgatcaacatctacttcagtttcgcttgaagtgctcgtatgtacatcccttccatcgaaatgaggtggtggcttag |
35109255 |
T |
|
| Q |
301 |
cacaaccaagtagcaatggtacacattccgaattcaggcacatatgcttcagtcaactc |
359 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35109254 |
cacaaccaagtagcaatggtacacattccgaatccaggcacatatgcttcagtcaactc |
35109196 |
T |
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