View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_35 (Length: 383)
Name: NF2371_low_35
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 37435579 - 37435926
Alignment:
| Q |
16 |
aatatatgtgtaaaaggttggttacattattagtgtatttctttttatgaacacttttaattcaatgagaaattctctaaaccaaggtgtatccttaaat |
115 |
Q |
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| T |
37435579 |
aatatatgtgtaaaaggttggttacattattagtgtatttctttttatgaacacttttaattcaatgagaaattctctaaaccaaggtgtatccttaaat |
37435678 |
T |
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| Q |
116 |
gaatcctagtatttcaatacattagtttcgtacaatgaggtgaagaaaaagtacgatgtatcttttttattatttatgtcttgaagtcagctgtattaaa |
215 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37435679 |
gaatcctagtatttcaatacattagtttcttacaatgaggtgaagaaaaagtacgatgtatcttttttattatttatgtcttgaagtcaactgtattaaa |
37435778 |
T |
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| Q |
216 |
acccatttgttaatacttgataannnnnnnnnnnnnnnatcactacagaactaataatatttaagaattttgatcgtgcttgtgtttatgcattttaaaa |
315 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37435779 |
acccatttgttaatacttgata-----tttttttttttatcactacagaactaataatatttaagaattttgatcgtgcttgtgtttatgcattttaaaa |
37435873 |
T |
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| Q |
316 |
taacttagatctaaaaagtattaactttcttgtttaaatgagatatagtttat |
368 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37435874 |
taacttagatctaaaaagtattaactttctcgtttaaatgagatatagtttat |
37435926 |
T |
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