View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2371_low_36 (Length: 381)
Name: NF2371_low_36
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 4135498 - 4135864
Alignment:
| Q |
1 |
agaaggaatgttctatagatcatagcaagggcattatgctttcactgatttgtaattatttgtttacttacaaatacaagtcaattctagcatgtcact- |
99 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4135498 |
agaaggaatgttctatagatcataggaagggcattatgctttcactgatttgtaattatttgtttacttacaaatacaagtcaactctagcatgtcactt |
4135597 |
T |
|
| Q |
100 |
-atttcttgatcatactttgtgcaatgcagtgtatctttagcaccattgaagaatgcattagattggggatcaagatcatcaaatgtgtgggcagggaaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4135598 |
tatttcttgatcatactttgtgcaatgcagtgtatctttggcaccattgaagaatgcattagattggggatcaagaccatcaaatgtgtgggcagggaaa |
4135697 |
T |
|
| Q |
199 |
gctgcggcagcagtaagtgctgttggtggtgggagacgagcacaatttctt---tgccaaatcgaccgctaatgcgacaccattggtgacttggttgatt |
295 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
4135698 |
gctgctgcagctgtaagtgctgttggtggtgggagacgagcacaatttcttctctgccaaatcgaccgctaatgcgaaaccattgctgacttggttgatt |
4135797 |
T |
|
| Q |
296 |
tagagaccaaagagaagattaaagaaattattgtttccttgcaagaattcaccttgagacttcaaga |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4135798 |
tagagaccaaagagaagattaaagaaattattgtttccttgcaagaattcaccttgagacttcaaga |
4135864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University