View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_4 (Length: 637)
Name: NF2371_low_4
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 537
Target Start/End: Complemental strand, 28896943 - 28896430
Alignment:
| Q |
17 |
tctcctcggcccaaaacgaatacaaattcaactccaaatctggctcattgagttaccacctccaatcacacctcttaagttttaacaaattagatattta |
116 |
Q |
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| T |
28896943 |
tctcctcggccgaaaacgaatacaaattcaactccaaaactggctcattgagttaccacctccaatcacacctcttaaattttaacaaattggatattta |
28896844 |
T |
|
| Q |
117 |
ctttatagataaaacacacagaaccacatatgaaactcaaaggaacaatctcataggaccaagccaccatatatttcaccaaaagaaaacagtacctgaa |
216 |
Q |
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| T |
28896843 |
cttcatagataaaacacacagaaccacatatcaaactcaaaggaacaatctcataggaccaagccaccatatatttcaccaaaagaaaacagtacatgaa |
28896744 |
T |
|
| Q |
217 |
ggccatttgcaaaatgttcaacatgaaagctagtgaacaacaacaaacagttagcacagcaaaatacatagcaccaatttcaacgggtaacacatcatat |
316 |
Q |
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| T |
28896743 |
ggccatttgcaaaatgttcaacataaaagctagtgaacaacaacaaacagttagcacagc---atacatagcaccaatttcaacgggtaacacatca--- |
28896650 |
T |
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| Q |
317 |
ttatttgcaatccagaacagctgaaaatatcataatcaattaaccctttttccctccatgttaaatccttctttagccaaatatataccagaaaatgcat |
416 |
Q |
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| T |
28896649 |
-tatttgcaatccagaacagctgaaaatatcataatcaattaaacctttttccctccatgttaaatccttctttagccaaatatataccagaaaatgcat |
28896551 |
T |
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| Q |
417 |
tgacgaagacaggtgagttaaagcttcacttgtgattaatatgaagtatattgccaaacctcacaattagagatatatgcccactgaaattaaatattca |
516 |
Q |
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| T |
28896550 |
tgacgaagacaggtgagttaaagcttcacttgtgattaatatgaagtatattgccaaacctcacaattagagatatatacccactgaaattgaatattca |
28896451 |
T |
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| Q |
517 |
tgcaattgagtgttttatttt |
537 |
Q |
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| T |
28896450 |
tgcaattgagtgttctatttt |
28896430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 625
Target Start/End: Complemental strand, 28896383 - 28896293
Alignment:
| Q |
536 |
ttaagttcaacaattgttgtataaaggaaataattagttattttctattttaaaattatttcaa-tttaaagagaataataaaataagtat |
625 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28896383 |
ttaagttcaacaattgttgtataaaggaaataatcagttattttctattttaaaattatttcaattttaaagagaataataaaataagtat |
28896293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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