View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_45 (Length: 340)
Name: NF2371_low_45
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 43097147 - 43096835
Alignment:
| Q |
18 |
cttctctgtcaactatgaacagccctttgataattgtcccatatgtaacactatcgggtaagaaacccttcttttgcagttcctcaaaaagattataagc |
117 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
43097147 |
cttctctgtcaactatgaacaaccctttgataattgtcccatatgtaacactatcgggtgagagacccttcttttgcagttcctcaaaaagattataagc |
43097048 |
T |
|
| Q |
118 |
agcattaaattcacgatccaagcaaaaggcattgattagaatgttgtatgaaatgatgtcaagcctaaggtcgccagcatgatcagtgattaacttgtaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43097047 |
agcattaaattcacgatccaagcaaaaggcattgattagaatgttgtatgaaatgatgtcaagcctaaggtcgccagcatgatcagtgattaacttgtaa |
43096948 |
T |
|
| Q |
218 |
gccttcaaaatttgtcccgcctcacacatttccttcacctttttctggagactagcaccatcagaaacctgaccagaaccctgagaaagattgaagcgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| ||||||||| |
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| T |
43096947 |
gccttcaaaatttgtcccgcctcacacatttccttcacctttttctggagactagcaccatcagaaacttgacaagaaccttgagaaagactgaagcgaa |
43096848 |
T |
|
| Q |
318 |
acgaatattttct |
330 |
Q |
| |
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||||||||||||| |
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| T |
43096847 |
acgaatattttct |
43096835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 17487408 - 17487700
Alignment:
| Q |
18 |
cttctctgtcaactatgaacagccctttgataattgtcccatatgtaacactatcgggtaaga---aacccttcttttgcagttcctcaaaaagattata |
114 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||||||||| |||||||| |||||| |
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| T |
17487408 |
cttctctgtcaaccatgaacagccctttgataattgtcccatacgtaacattatcgggtgagggataacccttcttttgcaggaactcaaaaaaattata |
17487507 |
T |
|
| Q |
115 |
agcagcattaaattcacgatccaagcaaaaggcattgattagaatgttgtatgaaatgatgtcaagcctaaggtcgccagcatgatcagtgattaacttg |
214 |
Q |
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|||||| |||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| || ||| ||||||||| ||||||||||||||||| |
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| T |
17487508 |
agcagcgttaacttcacgatccatgcaaagggcattgagtagaatgttgtatgtaatgatgtcaggcttaacctcgccagcaagatcagtgattaacttg |
17487607 |
T |
|
| Q |
215 |
taagccttcaaaatttgtcccgcctcacacatttccttcacctttttctggagactagcaccatcagaaacctgaccagaaccctgagaaaga |
307 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| |||||||| |||| || |||| ||||||||||||||||||||||||||||||| |
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| T |
17487608 |
taagccctcaaaatttgtcccgcctcacacatttccttcgcctttttcaggagcctggcactatcagaaacctgaccagaaccctgagaaaga |
17487700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 6779670 - 6779378
Alignment:
| Q |
18 |
cttctctgtcaactatgaacagccctttgataattgtcccatatgtaacactatcgggtaaga---aacccttcttttgcagttcctcaaaaagattata |
114 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||||||||| |||||||| |||||| |
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| T |
6779670 |
cttctctatcaaccatgaacagccctttgataattgtcccatacgtaacattatcgggtgagggataacccttcttttgcaggaactcaaaaaaattata |
6779571 |
T |
|
| Q |
115 |
agcagcattaaattcacgatccaagcaaaaggcattgattagaatgttgtatgaaatgatgtcaagcctaaggtcgccagcatgatcagtgattaacttg |
214 |
Q |
| |
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|||||| |||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| || ||| ||||||||| ||||||||||||||||| |
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| T |
6779570 |
agcagcgttaacttcacgatccatgcaaagggcattgagtagaatgttgtatgtaatgatgtcaggcttaacctcgccagcaagatcagtgattaacttg |
6779471 |
T |
|
| Q |
215 |
taagccttcaaaatttgtcccgcctcacacatttccttcacctttttctggagactagcaccatcagaaacctgaccagaaccctgagaaaga |
307 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||| |||| || |||| ||||||||||||||||||||||||||||||| |
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| T |
6779470 |
taagccctcaaaatttgtcccgcctcacacatttcctttgcctttttcaggagcctggcactatcagaaacctgaccagaaccctgagaaaga |
6779378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 22424242 - 22423950
Alignment:
| Q |
18 |
cttctctgtcaactatgaacagccctttgataattgtcccatatgtaacactatcgggtaaga---aacccttcttttgcagttcctcaaaaagattata |
114 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||||||||||||||| |||||| ||| |||| || |||||||||||||||| |||||||| |||||| |
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| T |
22424242 |
cttctctatcaaccatgaacaaccctttgataattgtcccatacgtaacattattgggtgagggataacccttcttttgcaggaactcaaaaaaattata |
22424143 |
T |
|
| Q |
115 |
agcagcattaaattcacgatccaagcaaaaggcattgattagaatgttgtatgaaatgatgtcaagcctaaggtcgccagcatgatcagtgattaacttg |
214 |
Q |
| |
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|||||| |||| ||||||||||| ||||| |||||||| |||||||||||||| |||||||||| || ||| ||||||||| ||| || |||||||||| |
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| T |
22424142 |
agcagcgttaacttcacgatccatgcaaagggcattgagtagaatgttgtatgtaatgatgtcaggcttaacctcgccagcaagattagcgattaacttg |
22424043 |
T |
|
| Q |
215 |
taagccttcaaaatttgtcccgcctcacacatttccttcacctttttctggagactagcaccatcagaaacctgaccagaaccctgagaaaga |
307 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| |||||||| |||| || |||| ||||||||||||||||||||| ||||||||| |
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| T |
22424042 |
taagccctcaaaatttgtcctgcctcacacatttccttcgcctttttcaggagcctggcactatcagaaacctgaccagaaccttgagaaaga |
22423950 |
T |
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