View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_47 (Length: 335)
Name: NF2371_low_47
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 27472860 - 27472587
Alignment:
| Q |
19 |
aggaattccctgcccaatgtccatattgatcacctagcaatagcatatttggattcttttcttcttaatttcataagtctgttttcgaaaaataaaggaa |
118 |
Q |
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| T |
27472860 |
aggaattccctgcccaatgtccatattgatcacctagcaatagcatatttggattcttttcttcttaatttcataagtttgttttcgaaaaataaaggaa |
27472761 |
T |
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| Q |
119 |
caaaaagagaagtttgtgcttttcttaactagctatatcactcaaagactcaaggaatgtactttacgtcatgtaataattttcctaattcctatctaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27472760 |
caaaaagagaagtttgtgcttttcttaactagctatatcactcaaagactcaagtaatgtactttacatcatgtaataattttcctaattcctatctaac |
27472661 |
T |
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| Q |
219 |
tgtattccaccctttcttctttatttggagtataaatttgtcggttcaagacatatgatcagttgtaagaaatc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27472660 |
tgtattccaccctttcttctttatttggagtataaatttgtcggttcaagacatatgatcagttgtaagaaatc |
27472587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 28092570 - 28092626
Alignment:
| Q |
238 |
tttatttggagtataaatttgtcggttcaagac--atatgatcagttgtaagaaatc |
292 |
Q |
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| T |
28092570 |
tttatttggagtataaacttgtcggtacaagacatatatgatcagttgtaagaaatc |
28092626 |
T |
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