View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_48 (Length: 328)
Name: NF2371_low_48
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 142 - 309
Target Start/End: Complemental strand, 38934266 - 38934097
Alignment:
| Q |
142 |
ctacatttcttctctcaa--caaagaaaattaaaacatttttatttttctcttttcattattcaatgtccttttgttgataaattggcaacctctaatat |
239 |
Q |
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| T |
38934266 |
ctacatttcttctctcaaaacaaagaaaattaaaacatttttatttttctcttttcattattcaatgtccttttgttgataaattggcaacctctaatat |
38934167 |
T |
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| Q |
240 |
ctctccacctgtttcaaatttcgttcagttttcatttctcaatatattcctcaactcaactataaaacca |
309 |
Q |
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| T |
38934166 |
ctctccacctgtttcaaatttcgttcagttttcatttctcaatatattcctcaactcaactataaaacca |
38934097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 38934321 - 38934278
Alignment:
| Q |
28 |
ctttatctcgcatcatcaactaagacatttccttcttcttcttg |
71 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38934321 |
ctttatctcgcatcatcaactaagacatttccttcttcttcttg |
38934278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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