View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_low_50 (Length: 319)

Name: NF2371_low_50
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_low_50
NF2371_low_50
[»] chr1 (10 HSPs)
chr1 (24-302)||(51407467-51407746)
chr1 (165-223)||(51756737-51756795)
chr1 (165-223)||(51762919-51762977)
chr1 (165-221)||(51782805-51782861)
chr1 (165-223)||(51858612-51858670)
chr1 (165-226)||(51381439-51381500)
chr1 (230-274)||(51782895-51782939)
chr1 (165-211)||(51832379-51832425)
chr1 (165-223)||(51854953-51855011)
chr1 (165-226)||(51221200-51221261)
[»] chr6 (4 HSPs)
chr6 (165-223)||(4182988-4183046)
chr6 (165-223)||(4743832-4743890)
chr6 (171-211)||(19119075-19119115)
chr6 (171-211)||(19126369-19126409)
[»] chr3 (13 HSPs)
chr3 (165-226)||(2631363-2631424)
chr3 (165-208)||(13498230-13498273)
chr3 (165-211)||(2459281-2459327)
chr3 (165-211)||(2696731-2696777)
chr3 (169-211)||(3754610-3754652)
chr3 (169-211)||(4142133-4142175)
chr3 (169-211)||(4157943-4157985)
chr3 (165-226)||(2492088-2492149)
chr3 (165-210)||(2644362-2644407)
chr3 (165-210)||(2659152-2659197)
chr3 (165-226)||(7324415-7324476)
chr3 (171-211)||(23197024-23197064)
chr3 (165-221)||(43991966-43992022)
[»] chr5 (5 HSPs)
chr5 (165-211)||(23769645-23769691)
chr5 (165-211)||(23819493-23819539)
chr5 (165-211)||(23766861-23766907)
chr5 (165-211)||(23816709-23816755)
chr5 (169-209)||(3181727-3181767)
[»] chr2 (2 HSPs)
chr2 (165-211)||(36577372-36577418)
chr2 (165-210)||(33020319-33020364)
[»] scaffold0044 (1 HSPs)
scaffold0044 (169-210)||(89153-89194)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 24 - 302
Target Start/End: Complemental strand, 51407746 - 51407467
Alignment:
Q  24 aaagttgacccactaaagcctcttcccacaccaaaaaattccggttccacaacatatcccaaggccaatgttcacgtattctcgttc-aaagatccctca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  51407746 aaagttgacccactaaagcctcttcccacaccaaaaaattccggctccacaacatatcccaaggccaatgttcacatattctcgttctaaagatcgctca 51407647  T
Q  123 tccttctttttgcaccgaaatagagaacaaacgaggattagatggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51407646 tccttctttttgcaccgaaatagagaacaaacgaggattagatggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctc 51407547  T
Q  223 acattcatataccaagacagtatatatttcagaagatgaccaagtgatgttgaagaggccggagatgggaggatttgatt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51407546 acattcatataccaagacagtatatatttcagaagatgaccaagtgatgttgaagaggccggagatgggaggatttgatt 51407467  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 51756795 - 51756737
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctca 223  Q
    ||||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  51756795 tggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctca 51756737  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 51762977 - 51762919
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctca 223  Q
    ||||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  51762977 tggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctca 51762919  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 51782805 - 51782861
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcct 221  Q
    |||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||||    
T  51782805 tggattatgaaggaatatggaaatgaacaatcttggaataaattattaagtgttcct 51782861  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 51858612 - 51858670
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctca 223  Q
    ||||| |||||||||||||| |||| | | |||||||||||||||||||||||||||||    
T  51858612 tggatcatgaaggaatatggaaatgtagaatcttggactaaattgttaagtgttcctca 51858670  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 51381500 - 51381439
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctcacat 226  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||||| ||| ||||| ||||    
T  51381500 tggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacat 51381439  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 51782895 - 51782939
Alignment:
Q  230 tataccaagacagtatatatttcagaagatgaccaagtgatgttg 274  Q
    |||||||||| | |||||||||||||||||||||||||| |||||    
T  51782895 tataccaagatactatatatttcagaagatgaccaagtgttgttg 51782939  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 51832379 - 51832425
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    ||||| ||||| |||||||| |||||||| |||||||||||||||||    
T  51832379 tggataatgaaagaatatggaaatgaacaatcttggactaaattgtt 51832425  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 51854953 - 51855011
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctca 223  Q
    ||||| ||||| |||||||| |||| | | |||||||||||||||||| ||||||||||    
T  51854953 tggatcatgaaagaatatggaaatgtagaatcttggactaaattgttatgtgttcctca 51855011  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 51221261 - 51221200
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctcacat 226  Q
    ||||| ||||| ||||| ||||||||| | |||||||||| ||||||| | |||||||||||    
T  51221261 tggataatgaatgaatacgggaatgaaaattcttggactatattgttacgggttcctcacat 51221200  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 4183046 - 4182988
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctca 223  Q
    ||||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  4183046 tggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctca 4182988  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 4743890 - 4743832
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctca 223  Q
    ||||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  4743890 tggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctca 4743832  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 19119075 - 19119115
Alignment:
Q  171 atgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  19119075 atgaaggaatatggaaatgaagagtcttggactaaattgtt 19119115  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 19126369 - 19126409
Alignment:
Q  171 atgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  19126369 atgaaggaatatggaaatgaagagtcttggactaaattgtt 19126409  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 2631363 - 2631424
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctcacat 226  Q
    |||||||||||||||||||| ||| || ||||||||||||||||||  ||||||||| ||||    
T  2631363 tggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcctgacat 2631424  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 13498230 - 13498273
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaatt 208  Q
    |||||||||||||||||||| ||| || ||||||||||||||||    
T  13498230 tggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 2459281 - 2459327
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    |||||||||||||||||||| ||| || |||||||||| ||||||||    
T  2459281 tggattatgaaggaatatggaaataaagagtcttggacaaaattgtt 2459327  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 2696777 - 2696731
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    |||||||||||||||||||| ||| || ||||||||| |||||||||    
T  2696777 tggattatgaaggaatatggaaataaagagtcttggattaaattgtt 2696731  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 3754610 - 3754652
Alignment:
Q  169 ttatgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    |||||||||||||||| ||| || |||||||||||||||||||    
T  3754610 ttatgaaggaatatggaaataaagagtcttggactaaattgtt 3754652  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 4142175 - 4142133
Alignment:
Q  169 ttatgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    |||||||||||||||| ||| || |||||||||||||||||||    
T  4142175 ttatgaaggaatatggaaataaagagtcttggactaaattgtt 4142133  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 4157985 - 4157943
Alignment:
Q  169 ttatgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    |||||||||||||||| ||| || |||||||||||||||||||    
T  4157985 ttatgaaggaatatggaaataaagagtcttggactaaattgtt 4157943  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 2492088 - 2492149
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctcacat 226  Q
    |||||||||||||| ||||| |||  | ||||||||||||||||||  ||||||||| ||||    
T  2492088 tggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacat 2492149  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 2644407 - 2644362
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgt 210  Q
    |||||||||||||| ||||| ||| || ||||||||||||||||||    
T  2644407 tggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2644362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 2659197 - 2659152
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgt 210  Q
    |||||||||||||| ||||| ||| || ||||||||||||||||||    
T  2659197 tggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2659152  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 7324476 - 7324415
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctcacat 226  Q
    |||||||||||||| || || ||| || ||||||||||||||||||  ||||||||| ||||    
T  7324476 tggattatgaaggactacggaaataaagagtcttggactaaattgtatagtgttcctaacat 7324415  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 23197024 - 23197064
Alignment:
Q  171 atgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    |||||||||||||| |||||| | |||||||||||||||||    
T  23197024 atgaaggaatatggaaatgaagaatcttggactaaattgtt 23197064  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 43991966 - 43992022
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcct 221  Q
    |||||||||||||||||||| |||  | |||||||||| |||||||  |||||||||    
T  43991966 tggattatgaaggaatatggaaatatagagtcttggaccaaattgtatagtgttcct 43992022  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 23769691 - 23769645
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||    
T  23769691 tggattatgaaggaatatgggaataaagcgtcttggactaaattgtt 23769645  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 23819539 - 23819493
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||    
T  23819539 tggattatgaaggaatatgggaataaagcgtcttggactaaattgtt 23819493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 23766907 - 23766861
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    ||||||||||| |||||||| ||| || |||||||||||||||||||    
T  23766907 tggattatgaaagaatatggaaataaagagtcttggactaaattgtt 23766861  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 23816755 - 23816709
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    ||||||||||| |||||||| ||| || |||||||||||||||||||    
T  23816755 tggattatgaaagaatatggaaataaagagtcttggactaaattgtt 23816709  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 3181727 - 3181767
Alignment:
Q  169 ttatgaaggaatatgggaatgaacagtcttggactaaattg 209  Q
    |||||||||||||||| |||||| ||||||||| |||||||    
T  3181727 ttatgaaggaatatggaaatgaagagtcttggattaaattg 3181767  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 36577372 - 36577418
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgtt 211  Q
    |||||||||||||||||||| ||| || ||||||||| |||||||||    
T  36577372 tggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 33020319 - 33020364
Alignment:
Q  165 tggattatgaaggaatatgggaatgaacagtcttggactaaattgt 210  Q
    |||||||||||||||||||| ||| || |||||||||||| |||||    
T  33020319 tggattatgaaggaatatggaaataaaaagtcttggactagattgt 33020364  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 89153 - 89194
Alignment:
Q  169 ttatgaaggaatatgggaatgaacagtcttggactaaattgt 210  Q
    |||||||||||||||| ||| || ||||||||||||||||||    
T  89153 ttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

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