View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2371_low_51 (Length: 313)
Name: NF2371_low_51
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_51 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0134 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 30719019 - 30719327
Alignment:
| Q |
1 |
atcatctattagtactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719019 |
atcatctattagtactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaat |
30719118 |
T |
|
| Q |
101 |
agagaaaaactagcatgtctccttacatatatattcaagcaacgtgcgtgatgcataagtgaaaaaggagaaaataatgaaatgggcctttgacccaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30719119 |
agagaaaaactagcatgtctccttacatatatattcaagcaa----cgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgacccaaat |
30719214 |
T |
|
| Q |
201 |
tttccttggttgacccgagaataaaaagaaggattggcaattgttataaaggggcgcacagtacaggagaagagccattgacgtttcggcagaaatgaat |
300 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
30719215 |
ttgtcttggttgacccgagaataaaaagaaggattgacaattgttataaaggggcgcacagtacaggagaagagccattcacgtttcggcagaaaggaat |
30719314 |
T |
|
| Q |
301 |
cacggttttggag |
313 |
Q |
| |
|
||||||||||||| |
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|
| T |
30719315 |
cacggttttggag |
30719327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 9314665 - 9314353
Alignment:
| Q |
1 |
atcatctattagtactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaat |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9314665 |
atcatctatttgtactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaat |
9314566 |
T |
|
| Q |
101 |
agagaaaaactagcatgtctccttacatatatat----tcaagcaacgtgcgtgatgcataagtgaaaaaggagaaaataatgaaatgggcctttgaccc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9314565 |
agagaaaaactagcatgtctccttacatatatatatattcaagcaacgtg----atgcataagtgagaaaggagaaaataatgaaatgggcctttgaccc |
9314470 |
T |
|
| Q |
197 |
aaaatttccttggttgacccgagaataaaaagaaggattggcaattgttataaaggggcgcacagtacaggagaagagccattgacgtttcggcagaaat |
296 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
9314469 |
aaatttgccttggttgacccgagaataaaaagaaggattggcaattgttataaaggggcgcagagtacaggagaagagccattcacgtttcggcagaaag |
9314370 |
T |
|
| Q |
297 |
gaatcacggttttggag |
313 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
9314369 |
gaatcacggttttggag |
9314353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 28117079 - 28117390
Alignment:
| Q |
1 |
atcatctattagtacta---atggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttga |
97 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28117079 |
atcatctattagtactactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttga |
28117178 |
T |
|
| Q |
98 |
aatagagaaaaactagcatgtctccttacatatatattcaagcaacgtgcgtgatgcataagtgaaaaaggagaaaataatgaaatgggcctttgaccca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28117179 |
aatagagaaaaactagcatgtctccttacatatatattcaagcaacgtg----atgcataagtgagaaaggagaaaataatgaaatgggcctttgaccca |
28117274 |
T |
|
| Q |
198 |
aaatttccttggttgacccgagaataaaaagaaggattggcaattgttataaaggggcgcacagtacaggagaagagccattgacgtttcggcagaaatg |
297 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||| | |
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| T |
28117275 |
aatttgccttggttgacccgagaataaaaagaaggattggcaattgttataaaagggtgcacagtacaagagaagagccattcacgtttcggcagaaagg |
28117374 |
T |
|
| Q |
298 |
aatcacggttttggag |
313 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
28117375 |
aatcacggttttggag |
28117390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 22463654 - 22463962
Alignment:
| Q |
1 |
atcatctattagtact---aatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttga |
97 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22463654 |
atcatctattagtactactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttga |
22463753 |
T |
|
| Q |
98 |
aatagagaaaaactagcatgtctccttacatatatattcaagcaacgtgcgtgatgcataagtgaaaaaggagaaaataatgaaatgggcctttgaccca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22463754 |
aatagagaaaaactagcatgtctccttacatatatattcaagcaa----cgtgatgcataagtgagaaaggagaaaataatgaaatgggcctttgaccca |
22463849 |
T |
|
| Q |
198 |
aaatttccttggttgacccgagaataaaaagaaggattggcaattgttataaaggggcgcacagtacaggagaagagccattgacgtttcggcagaaatg |
297 |
Q |
| |
|
|| || ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| || |||||||||||| | |
|
|
| T |
22463850 |
aatttgccttggttgacccgagaattaaaagaaggattggcaattgttataaaagggagcacagtacaagagaagagccattcacatttcggcagaaagg |
22463949 |
T |
|
| Q |
298 |
aatcacggttttg |
310 |
Q |
| |
|
||||||||||||| |
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|
| T |
22463950 |
aatcacggttttg |
22463962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 23149045 - 23149281
Alignment:
| Q |
1 |
atcatctattagtactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23149045 |
atcatctattagtactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaagt |
23149144 |
T |
|
| Q |
101 |
agagaaaaactagcatgtctccttacatatatattcaagcaacgtgcgtgatgcataagtgaaaaaggagaaaataatgaaatgggcctttgacccaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23149145 |
agagaaaaactagcatgtctccttacatatatattcaagcaa----cgtgatacataagtgagaaaggagaaaataatggaatgggcctttgacccaaat |
23149240 |
T |
|
| Q |
201 |
tttccttggttgacccgagaataaaaagaaggattggcaat |
241 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23149241 |
ttgccttggttgacccgagaataaaaagaaggattggcaat |
23149281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 279
Target Start/End: Original strand, 2452571 - 2452823
Alignment:
| Q |
23 |
ggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaatagagaaaaactagcatgtctcc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2452571 |
ggctaaatgaccaacaaaaagagccacaacgtggcacaccattgaagaaaagaaaatgtgtttcattggctttgaaatagagaaaaactagcatgtctcc |
2452670 |
T |
|
| Q |
123 |
ttacatatatattcaagcaacgtgcgtgatgcataagtgaaaaaggagaaaataatgaaatgggcctttgacccaaaatttccttggttgacccgagaat |
222 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
2452671 |
ttacatatatattcaagcaa----cgtgatgcataagtgagaaaggagaaaataatggaatgggcctttgacccaaatttgccttggttgacccgagaat |
2452766 |
T |
|
| Q |
223 |
aaaaagaaggattggcaattgttataaaggggcgcacagtacaggagaagagccatt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2452767 |
aaaaagaaggattggcaattgttataaaggctcgcacagtacaggagaagagccatt |
2452823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 17944168 - 17944200
Alignment:
| Q |
281 |
acgtttcggcagaaatgaatcacggttttggag |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
17944168 |
acgtttcggcagaaaggaatcacggttttggag |
17944200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 10385175 - 10385450
Alignment:
| Q |
1 |
atcatctattagtactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaat |
100 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10385175 |
atcatgtagtagtactaatggtggctaaatgaccaacaaaaagagccacaacgtggcagaccattgaagaaaagaaaatgtgtttcattggctttgaaat |
10385274 |
T |
|
| Q |
101 |
agagaaaaactagcatgtctccttacatatatattcaagcaacgtgcgtgatgcataagtgaaaaaggagaaaataatgaaatgggcctttgacccaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10385275 |
agagaaaaactagcatgtctccttacatatatattcaagcaa----cgtgatgcataagtgagaaaggagaaaataatggaatgggcctttgacccaaat |
10385370 |
T |
|
| Q |
201 |
tttccttggttgacccgagaataaaaagaaggattggcaattgttataaagg-ggcgcacagtacaggagaagagccatt |
279 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
10385371 |
ttgcctttgttgacccgagaataaaaagaaggattgacaattgttataaaggctgcacacagtactggagaagagccatt |
10385450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 6729 - 6801
Alignment:
| Q |
241 |
ttgttataaaggggcgcacagtacaggagaagagccattgacgtttcggcagaaatgaatcacggttttggag |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |
|
|
| T |
6729 |
ttgttataaaggggcgcacagtacaggagaagagccattaacgttttggcagaaaggaatcacggttttggag |
6801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 22084046 - 22084009
Alignment:
| Q |
276 |
cattgacgtttcggcagaaatgaatcacggttttggag |
313 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
22084046 |
cattcacgtttcggcagaaaagaatcacggttttggag |
22084009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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