View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_56 (Length: 295)
Name: NF2371_low_56
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 52932623 - 52932889
Alignment:
| Q |
22 |
ttgtatcatgcattgcctcgaacaattttgtctaggaaaataattagagataacaatgatcataagnnnnnnnaacgatcaaaaattgtatattgacgtg |
121 |
Q |
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| T |
52932623 |
ttgtgtcatgcattgcctcgaacaattttgtctacgaaaataattagagataacaatgatcataagtttttttaacgatcaaaaattgtatattgacgtg |
52932722 |
T |
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| Q |
122 |
tgcgaaatagttgacggtcatgtatattttgaatcagacaaaatattgtctacaaaaatatcaaatattcgtacatgagacaaaaaaggtcaaataattt |
221 |
Q |
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| T |
52932723 |
tgcaaaatagttgacactcatgtatattttgaatcggacaaagtattgtctacaaaaatatcaaatattcgtacatgaaacaaaaaaggtcaaataatct |
52932822 |
T |
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| Q |
222 |
tttatattagttactccaaaatttagttggcggtaactctgttgaaagatatcttcgtgttcatctc |
288 |
Q |
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| T |
52932823 |
tttatattagttattccaaaatttagttggcggtaactttgttgaaagatatcttcatgttcttctc |
52932889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 183
Target Start/End: Complemental strand, 52556025 - 52555897
Alignment:
| Q |
56 |
ggaaaataattagagataacaatgatcataagnnnnnnna-acgatcaaaaattgtatattgacgtgtgcgaaatagttgacggtcatgtatattttgaa |
154 |
Q |
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| T |
52556025 |
ggaaaataattaaagataacaatgatcataagtttttttttaagatcaaaagttgtatattagcatatgtaaaatagttgacaaccatgtatattttgaa |
52555926 |
T |
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| Q |
155 |
tcagacaaaatattgtctacaaaaatatc |
183 |
Q |
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| T |
52555925 |
tcggaaataatattgtctacaaaaatatc |
52555897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 22576556 - 22576633
Alignment:
| Q |
197 |
tgagacaaaaaaggtcaaataattttttatattagttactccaaa-atttagttggcggtaactctgttgaaagatat |
273 |
Q |
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|||||| || ||| ||||| ||| ||||||||||||||||| ||| |||| |||||||| ||||||| ||||||||| |
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| T |
22576556 |
tgagacgaagaagttcaaacaatcttttatattagttactcaaaatctttatttggcggtgactctgtagaaagatat |
22576633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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